CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 181 | P181L | P361L | nonsyn | cCc | cTc | 5801 | 5625 | 0.96966 | 1346-1348 |
ORF1ab/nsp2 | 181 | P181L | P361L | nonsyn | cCC | cTT | 5801 | 176 | 0.0303396 | 1346-1348 |
Details of the mutation P181L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 5625 | 5801 | All | 0.001076 |
ORF1ab/nsp2 | 181 | P181L | cCC | cTT | 176 | 5801 | All | 0.000034 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 2079 | 2079 | AY.4 | 0.003236 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 2035 | 2035 | AE.8 | 0.99511 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 305 | 305 | B.1.1.7 | 0.000273 |
ORF1ab/nsp2 | 181 | P181L | cCC | cTT | 172 | 200 | B.1.2 | 0.001515 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 28 | 200 | B.1.2 | 0.000247 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 133 | 133 | AY.3 | 0.001323 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 122 | 122 | AY.103 | 0.000758 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 109 | 109 | C.36 | 0.099271 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 53 | 53 | B.1.617.2 | 0.0002 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 51 | 51 | AY.39.2 | 0.078582 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 51 | 51 | B.1.1 | 0.000925 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 37 | 37 | B.1.177.86 | 0.006788 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 33 | 33 | P.1 | 0.00052 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 28 | 28 | B.1.177 | 0.000369 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 27 | 27 | AY.44 | 0.000164 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 25 | 27 | B.1 | 0.000229 |
ORF1ab/nsp2 | 181 | P181L | cCC | cTT | 2 | 27 | B.1 | 0.000018 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 26 | 26 | AY.25 | 0.000156 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 25 | 25 | AY.43 | 0.000111 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 20 | 20 | B.1.258.14 | 0.019608 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 19 | 19 | AY.26 | 0.000538 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 16 | 16 | AY.39 | 0.000395 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 15 | 15 | B.1.1.306 | 0.006576 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 15 | 15 | B.1.177.81 | 0.00284 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 14 | 14 | AY.42 | 0.000563 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 14 | 14 | B.1.538 | 0.112903 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 12 | 12 | AY.102 | 0.000318 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 12 | 12 | AY.4.2 | 0.00026 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 11 | 11 | AY.119 | 0.000388 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 10 | 10 | AY.61 | 0.001048 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 10 | 10 | B.1.1.519 | 0.000397 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 10 | 10 | B.1.234 | 0.001319 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 9 | 10 | B.1.351 | 0.000268 |
ORF1ab/nsp2 | 181 | P181L | cCC | cTT | 1 | 10 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 10 | 10 | B.1.526 | 0.000235 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 8 | 8 | B.1.160 | 0.00025 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 8 | 8 | Q.3 | 0.00116 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 7 | 7 | AY.100 | 0.000322 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 7 | 7 | AY.29 | 0.00011 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 7 | 7 | AY.39.1 | 0.000277 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 7 | 7 | AY.47 | 0.000218 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 7 | 7 | B.1.1.37 | 0.00135 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 7 | 7 | B.1.375 | 0.005738 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 7 | 7 | B.1.621 | 0.00062 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 7 | 7 | P.2 | 0.001306 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 6 | 6 | AY.121 | 0.000812 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 5 | 5 | AY.118 | 0.000313 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 5 | 5 | AY.120 | 0.000186 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 5 | 5 | P.1.14 | 0.000239 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 4 | 4 | AY.4.2.1 | 0.000596 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 4 | 4 | B.1.177.75 | 0.004162 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 3 | 3 | AY.46.2 | 0.001906 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 3 | 3 | B.1.177.33 | 0.004934 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 3 | 3 | B.1.177.52 | 0.005272 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 3 | 3 | B.1.436 | 0.003086 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 2 | 2 | AY.46.1 | 0.002053 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 2 | 2 | B.1.1.141 | 0.004024 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 2 | 2 | B.1.1.397 | 0.004505 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 2 | 2 | B.1.160.14 | 0.004237 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 2 | 2 | C.14 | 0.008658 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 2 | 2 | C.17 | 0.111111 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 2 | 2 | C.18 | 0.005181 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 2 | 2 | N.5 | 0.003534 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | AA.1 | 0.007246 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.1.180 | 0.010753 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.1.366 | 0.015873 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.1.466 | 0.008696 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.177.80 | 0.001912 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.318 | 0.038462 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.36.24 | 0.006173 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 181 | P181L | cCC | cTT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.20 | 0.023256 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | B.46 | 0.020833 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | C.27 | 0.018519 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | C.39 | 0.018868 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp2 | 181 | P181L | cCc | cTc | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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