CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 125 | P125P | P305P | syn | ccA | ccG | 4409 | 4247 | 0.963257 | 1178-1180 |
ORF1ab/nsp2 | 125 | P125P | P305P | syn | ccA | ccT | 4409 | 136 | 0.030846 | 1178-1180 |
ORF1ab/nsp2 | 125 | P125P | P305P | syn | ccA | ccC | 4409 | 26 | 0.00589703 | 1178-1180 |
Details of the mutation P125P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 4247 | 4409 | All | 0.000812 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccT | 136 | 4409 | All | 0.000026 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccC | 26 | 4409 | All | 0.000005 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 3088 | 3092 | B.1.575 | 0.936893 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccT | 4 | 3092 | B.1.575 | 0.001214 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 395 | 395 | B.1.575.1 | 0.963415 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 207 | 208 | B.1.575.2 | 0.995192 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccT | 1 | 208 | B.1.575.2 | 0.004808 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 203 | 205 | AY.25 | 0.001221 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccT | 2 | 205 | AY.25 | 0.000012 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 104 | 118 | B.1.1.7 | 0.000093 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccT | 9 | 118 | B.1.1.7 | 0.000008 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccC | 5 | 118 | B.1.1.7 | 0.000004 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 48 | 50 | B.1 | 0.00044 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccT | 2 | 50 | B.1 | 0.000018 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccT | 28 | 47 | AY.103 | 0.000174 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 19 | 47 | AY.103 | 0.000118 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 35 | 42 | AY.4 | 0.000054 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccT | 4 | 42 | AY.4 | 0.000006 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccC | 3 | 42 | AY.4 | 0.000005 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccT | 26 | 34 | P.1 | 0.00041 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 8 | 34 | P.1 | 0.000126 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccT | 31 | 32 | B.1.2 | 0.000273 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 1 | 32 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 25 | 25 | B.1.427 | 0.001262 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 22 | 22 | B.1.595 | 0.005741 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 19 | 22 | B.1.617.2 | 0.000072 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccT | 3 | 22 | B.1.617.2 | 0.000011 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccT | 11 | 16 | AY.43 | 0.000049 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 4 | 16 | AY.43 | 0.000018 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccC | 1 | 16 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccT | 4 | 5 | AY.13 | 0.000644 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 1 | 5 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 2 | 4 | AY.47 | 0.000062 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccC | 2 | 4 | AY.47 | 0.000062 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccT | 2 | 4 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 2 | 4 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccC | 4 | 4 | B.1.582 | 0.001963 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccC | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccT | 3 | 3 | B.1.110.3 | 0.002155 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 2 | 2 | AY.15 | 0.004444 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccC | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccC | 1 | 2 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 1 | 2 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccC | 2 | 2 | N.4 | 0.008511 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccC | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccT | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccG | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp2 | 125 | P125P | ccA | ccC | 1 | 1 | P.4 | 0.003802 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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