CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 414 | N414N | N594N | syn | aaT | aaC | 3215 | 3215 | 1 | 2045-2047 |
Details of the mutation N414N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 3215 | 3215 | All | 0.000615 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 2052 | 2052 | AY.4 | 0.003194 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 367 | 367 | B.1.1.7 | 0.000329 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 156 | 156 | B.1 | 0.001429 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 150 | 150 | B.1.617.2 | 0.000565 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 95 | 95 | AY.43 | 0.000421 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 79 | 79 | P.2 | 0.014744 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 34 | 34 | C.36.3 | 0.019285 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 28 | 28 | AY.100 | 0.001288 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 28 | 28 | B.1.160.19 | 1 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 27 | 27 | AY.25 | 0.000162 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 22 | 22 | AY.44 | 0.000134 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 20 | 20 | AY.39 | 0.000494 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 12 | 12 | AY.117 | 0.001014 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 11 | 11 | AY.61 | 0.001153 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 10 | 10 | AY.111 | 0.001832 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 8 | 8 | AY.3 | 0.00008 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 6 | 6 | AY.39.1 | 0.000238 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 5 | 5 | AY.108 | 0.005513 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 3 | 3 | B.1.1.298 | 0.002586 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 2 | 2 | B.1.128 | 0.001271 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 2 | 2 | B.1.509 | 0.001732 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 2 | 2 | B.39 | 0.004662 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | B.1.131 | 0.008772 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | B.1.306 | 0.005714 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | B.1.420 | 0.010417 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | B.1.88.1 | 0.004808 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp2 | 414 | N414N | aaT | aaC | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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