CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 404 | M404V | M584V | nonsyn | Atg | Gtg | 2297 | 2297 | 1 | 2015-2017 |
Details of the mutation M404V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 2297 | 2297 | All | 0.000439 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 843 | 843 | AY.4 | 0.001312 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 243 | 243 | B.1.1.7 | 0.000218 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 118 | 118 | B.1.617.2 | 0.000444 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 101 | 101 | B.1.1.380 | 0.990196 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 76 | 76 | AY.43 | 0.000337 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 63 | 63 | AY.3 | 0.000627 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 51 | 51 | B.1.427 | 0.002575 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 50 | 50 | AY.25 | 0.000301 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 44 | 44 | B.1.160 | 0.001372 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 43 | 43 | AY.44 | 0.000262 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 38 | 38 | B.1 | 0.000348 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 36 | 36 | AY.47 | 0.00112 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 28 | 28 | AY.103 | 0.000174 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 27 | 27 | P.1 | 0.000425 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 24 | 24 | AY.98.1 | 0.001162 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 23 | 23 | AY.26 | 0.000651 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 22 | 22 | B.1.429 | 0.000518 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 21 | 21 | AY.75 | 0.001176 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 20 | 20 | B.1.2 | 0.000176 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 17 | 17 | AY.2 | 0.006054 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 16 | 16 | AY.111 | 0.00293 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 16 | 16 | B.1.177 | 0.000211 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 15 | 15 | B.1.1 | 0.000272 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 15 | 15 | B.1.1.348 | 0.011943 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 14 | 14 | AY.5 | 0.000289 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 12 | 12 | B.1.311 | 0.003295 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 12 | 12 | B.1.396 | 0.008469 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 11 | 11 | AY.39 | 0.000272 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 10 | 10 | AY.102 | 0.000265 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 10 | 10 | AY.89 | 0.04902 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 9 | 9 | B.1.1.519 | 0.000357 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 9 | 9 | B.1.214.3 | 0.064286 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 9 | 9 | B.1.587 | 0.017078 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 8 | 8 | AY.29 | 0.000126 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 8 | 8 | P.1.12 | 0.003872 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 7 | 7 | AY.93 | 0.001912 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 7 | 7 | B.1.258 | 0.000466 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 7 | 7 | B.1.351 | 0.000208 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 7 | 7 | B.1.526 | 0.000165 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 6 | 6 | AY.100 | 0.000276 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 6 | 6 | AY.119 | 0.000212 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 6 | 6 | AY.20 | 0.000233 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 6 | 6 | B.1.243 | 0.000418 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 5 | 5 | AY.51 | 0.004545 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 5 | 5 | AY.9.2 | 0.000184 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 4 | 4 | AY.34.1 | 0.00204 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 3 | 3 | AY.64 | 0.001786 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 3 | 3 | B.1.177.32 | 0.004049 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 3 | 3 | B.1.400 | 0.001287 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 3 | 3 | B.1.637 | 0.000219 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 2 | 2 | B.1.1.176 | 0.000879 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 2 | 2 | B.1.1.51 | 0.003436 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 2 | 2 | B.1.177.52 | 0.003515 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 2 | 2 | B.1.177.62 | 0.002384 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | AB.1 | 0.008197 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.1.13 | 0.035714 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.1.328 | 0.016949 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.1.355 | 0.015385 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.1.404 | 0.015873 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.212 | 0.016667 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.36.21 | 0.00216 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.36.28 | 0.005747 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.591 | 0.010638 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | B.12 | 0.00641 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp2 | 404 | M404V | Atg | Gtg | 1 | 1 | P.2 | 0.000187 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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