CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 117 | M117V | M297V | nonsyn | Atg | Gtg | 10097 | 10095 | 0.999802 | 1154-1156 |
ORF1ab/nsp2 | 117 | M117V | M297V | nonsyn | AtG | GtT | 10097 | 1 | 0.0000990393 | 1154-1156 |
ORF1ab/nsp2 | 117 | M117V | M297V | nonsyn | AtG | GtC | 10097 | 1 | 0.0000990393 | 1154-1156 |
Details of the mutation M117V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 10095 | 10097 | All | 0.001931 |
ORF1ab/nsp2 | 117 | M117V | AtG | GtC | 1 | 10097 | All | 0 |
ORF1ab/nsp2 | 117 | M117V | AtG | GtT | 1 | 10097 | All | 0 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 9309 | 9309 | B.1.438.1 | 0.998498 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 150 | 150 | B.1.438 | 0.980392 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 94 | 94 | AY.4 | 0.000146 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 66 | 66 | AY.16 | 0.025057 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 64 | 64 | B.1 | 0.000586 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 52 | 52 | B.1.438.2 | 1 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 47 | 47 | B.1.438.4 | 1 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 30 | 30 | B.1.177 | 0.000395 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 29 | 29 | AY.41 | 0.008524 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 24 | 24 | B.1.617.2 | 0.00009 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 20 | 20 | B.1.1.7 | 0.000018 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 18 | 18 | P.1 | 0.000284 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 13 | 13 | B.1.438.3 | 1 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 12 | 12 | AY.103 | 0.000075 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 10 | 11 | AY.43 | 0.000044 |
ORF1ab/nsp2 | 117 | M117V | AtG | GtC | 1 | 11 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 11 | 11 | AY.44 | 0.000067 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 10 | 10 | B.1.2 | 0.000088 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 10 | 10 | B.1.243 | 0.000696 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 9 | 9 | B.1.429 | 0.000212 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 8 | 8 | AY.3 | 0.00008 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 7 | 7 | AY.118 | 0.000439 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 5 | 5 | B.1.311 | 0.001373 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 3 | 3 | B.1.1.63 | 0.001157 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 3 | 3 | B.1.468 | 0.017143 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 2 | 2 | AY.4.4 | 0.000818 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp2 | 117 | M117V | AtG | GtT | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | A | 0.000387 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | B.1.1.365 | 0.005587 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | B.1.1.367 | 0.055556 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | B.1.227 | 0.047619 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | B.1.439 | 0.005917 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | B.1.513 | 0.013889 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | P.1.14 | 0.000048 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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