CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = L550P

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2550L550PL730PnonsyncTccCc1681670.9940482453-2455
ORF1ab/nsp2550L550PL730PnonsyncTCcCA16810.005952382453-2455

Details of the mutation L550P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2550L550PcTccCc167168All0.000032
ORF1ab/nsp2550L550PcTCcCA1168All0
ORF1ab/nsp2550L550PcTccCc3737AY.50.000764
ORF1ab/nsp2550L550PcTccCc1414AY.40.000022
ORF1ab/nsp2550L550PcTccCc1313B.1.1.3690.005801
ORF1ab/nsp2550L550PcTccCc1212B.1.1.2910.008909
ORF1ab/nsp2550L550PcTccCc1212B.1.1.70.000011
ORF1ab/nsp2550L550PcTccCc88AY.1030.00005
ORF1ab/nsp2550L550PcTccCc66AY.440.000037
ORF1ab/nsp2550L550PcTccCc66B.1.4290.000141
ORF1ab/nsp2550L550PcTccCc55AY.430.000022
ORF1ab/nsp2550L550PcTccCc55AY.540.000477
ORF1ab/nsp2550L550PcTccCc44B.1.4270.000202
ORF1ab/nsp2550L550PcTccCc44B.1.5880.00364
ORF1ab/nsp2550L550PcTccCc44B.1.617.20.000015
ORF1ab/nsp2550L550PcTccCc33AY.4.20.000065
ORF1ab/nsp2550L550PcTccCc33B.10.000027
ORF1ab/nsp2550L550PcTccCc33B.1.20.000026
ORF1ab/nsp2550L550PcTccCc33B.1.5260.000071
ORF1ab/nsp2550L550PcTccCc12B.1.1600.000031
ORF1ab/nsp2550L550PcTCcCA12B.1.1600.000031
ORF1ab/nsp2550L550PcTccCc22B.1.2430.000139
ORF1ab/nsp2550L550PcTccCc22B.1.4620.014493
ORF1ab/nsp2550L550PcTccCc11AY.1170.000085
ORF1ab/nsp2550L550PcTccCc11AY.230.00007
ORF1ab/nsp2550L550PcTccCc11AY.250.000006
ORF1ab/nsp2550L550PcTccCc11AY.290.000016
ORF1ab/nsp2550L550PcTccCc11AY.30.00001
ORF1ab/nsp2550L550PcTccCc11AY.390.000025
ORF1ab/nsp2550L550PcTccCc11AY.39.10.00004
ORF1ab/nsp2550L550PcTccCc11AY.5.40.000277
ORF1ab/nsp2550L550PcTccCc11AY.680.000274
ORF1ab/nsp2550L550PcTccCc11AY.70.000196
ORF1ab/nsp2550L550PcTccCc11AY.99.20.000092
ORF1ab/nsp2550L550PcTccCc11B0.000128
ORF1ab/nsp2550L550PcTccCc11B.1.10.000018
ORF1ab/nsp2550L550PcTccCc11B.1.1.1530.001095
ORF1ab/nsp2550L550PcTccCc11B.1.1.5190.00004
ORF1ab/nsp2550L550PcTccCc11B.1.177.460.000918
ORF1ab/nsp2550L550PcTccCc11B.1.2220.001692
ORF1ab/nsp2550L550PcTccCc11B.1.2580.000067
ORF1ab/nsp2550L550PcTccCc11B.1.5950.000261
ORF1ab/nsp2550L550PcTccCc11C.320.023256