CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 550 | L550L | L730L | syn | ctC | ctT | 10179 | 9936 | 0.976127 | 2453-2455 |
ORF1ab/nsp2 | 550 | L550L | L730L | syn | ctC | ctA | 10179 | 230 | 0.0225955 | 2453-2455 |
ORF1ab/nsp2 | 550 | L550L | L730L | syn | ctC | ctG | 10179 | 11 | 0.00108066 | 2453-2455 |
ORF1ab/nsp2 | 550 | L550L | L730L | syn | CtC | TtA | 10179 | 2 | 0.000196483 | 2453-2455 |
Details of the mutation L550L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 9936 | 10179 | All | 0.0019 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctA | 230 | 10179 | All | 0.000044 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctG | 11 | 10179 | All | 0.000002 |
ORF1ab/nsp2 | 550 | L550L | CtC | TtA | 2 | 10179 | All | 0 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1938 | 2104 | B.1.1.7 | 0.001735 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctA | 162 | 2104 | B.1.1.7 | 0.000145 |
ORF1ab/nsp2 | 550 | L550L | CtC | TtA | 2 | 2104 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctG | 2 | 2104 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1297 | 1299 | B.1.617.2 | 0.004884 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctA | 2 | 1299 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1073 | 1075 | AY.4 | 0.00167 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctG | 1 | 1075 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctA | 1 | 1075 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 823 | 868 | P.1 | 0.012966 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctA | 45 | 868 | P.1 | 0.000709 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 475 | 475 | B.1.1.312 | 0.908222 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 348 | 348 | B.1.1.50 | 0.236253 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 204 | 204 | B.1.177 | 0.002686 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 200 | 200 | AY.102 | 0.005303 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 176 | 176 | AY.103 | 0.001093 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 170 | 170 | B.1.2 | 0.001497 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 164 | 164 | AY.75 | 0.009188 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 151 | 151 | AY.44 | 0.000919 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 149 | 149 | B.1.429 | 0.003506 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 146 | 148 | B.1 | 0.001337 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctA | 2 | 148 | B.1 | 0.000018 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 119 | 119 | B.1.526 | 0.002797 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 95 | 95 | AY.26 | 0.002689 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 89 | 89 | B.1.351 | 0.002646 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 87 | 88 | B.1.1 | 0.001578 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctA | 1 | 88 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 84 | 86 | AY.25 | 0.000505 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctA | 2 | 86 | AY.25 | 0.000012 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 81 | 85 | AY.3 | 0.000806 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctG | 3 | 85 | AY.3 | 0.00003 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctA | 1 | 85 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 77 | 79 | AY.43 | 0.000341 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctA | 2 | 79 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 74 | 74 | B.1.1.214 | 0.004104 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 64 | 64 | AY.5 | 0.001322 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 62 | 62 | AY.117 | 0.00524 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 58 | 60 | AY.39 | 0.001433 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctA | 2 | 60 | AY.39 | 0.000049 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 58 | 58 | A.2.5 | 0.028942 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 43 | 43 | B.1.1.318 | 0.012975 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 41 | 41 | AY.100 | 0.001886 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 37 | 38 | B.1.1.519 | 0.001469 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctA | 1 | 38 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 36 | 36 | AY.110 | 0.004057 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 33 | 34 | B.1.160 | 0.001029 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctG | 1 | 34 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 33 | 34 | Q.1 | 0.004169 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctG | 1 | 34 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 31 | 33 | AY.23 | 0.002162 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctG | 2 | 33 | AY.23 | 0.000139 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 33 | 33 | AY.45 | 0.004016 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 33 | 33 | B.1.621.1 | 0.016692 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 31 | 31 | AY.29 | 0.000489 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 31 | 31 | R.2 | 0.449275 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 30 | 30 | B.1.1.121 | 0.072816 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 28 | 28 | B.1.349 | 0.020014 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 27 | 27 | AY.42 | 0.001086 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 27 | 27 | B.1.221 | 0.001918 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 24 | 24 | AY.7 | 0.004704 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 24 | 24 | B.1.1.483 | 0.923077 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 24 | 24 | B.1.39 | 0.09375 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 23 | 23 | P.2 | 0.004293 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 22 | 22 | AY.121 | 0.002977 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 22 | 22 | B.1.576 | 0.019946 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 21 | 21 | B.1.258.17 | 0.002183 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 21 | 21 | B.1.575 | 0.006371 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 20 | 20 | AY.120 | 0.000744 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 20 | 20 | AY.4.2 | 0.000434 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 20 | 20 | B.1.427 | 0.00101 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 20 | 20 | C.37 | 0.002321 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 19 | 19 | B.1.443 | 0.088785 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 17 | 17 | AY.113 | 0.002421 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 17 | 17 | B.6 | 0.015469 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 16 | 16 | AY.98.1 | 0.000775 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 16 | 16 | B.1.596 | 0.001394 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 14 | 14 | AY.47 | 0.000435 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 14 | 14 | AY.61 | 0.001467 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 14 | 14 | AY.9.1 | 0.001172 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 14 | 14 | AY.98 | 0.001106 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 14 | 14 | B.1.177.44 | 0.007265 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 13 | 13 | AY.20 | 0.000505 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 12 | 12 | AY.64 | 0.007143 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 12 | 12 | B.1.36 | 0.001751 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 12 | 12 | Q.8 | 0.001979 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 11 | 11 | AY.119 | 0.000388 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 11 | 11 | AY.27 | 0.000712 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 11 | 11 | B.1.258 | 0.000732 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 11 | 11 | B.1.396 | 0.007763 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 11 | 11 | B.1.400 | 0.004719 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 11 | 11 | B.1.617.1 | 0.001419 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 10 | 10 | AY.105 | 0.006431 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 9 | 10 | B | 0.00115 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctG | 1 | 10 | B | 0.000128 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 10 | 10 | B.1.1.222 | 0.00204 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 10 | 10 | B.1.561 | 0.00397 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 10 | 10 | B.1.621 | 0.000885 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 9 | 10 | P.1.12 | 0.004356 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctA | 1 | 10 | P.1.12 | 0.000484 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 10 | 10 | P.7 | 0.043668 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 10 | 10 | R.1 | 0.0009 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 9 | 9 | AY.46 | 0.000937 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 9 | 9 | AY.46.2 | 0.005718 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 9 | 9 | AY.6 | 0.00037 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 9 | 9 | B.1.243 | 0.000626 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 9 | 9 | D.2 | 0.000675 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 8 | 8 | AY.34 | 0.000776 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 8 | 8 | B.1.1.284 | 0.000859 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 8 | 8 | B.1.1.317 | 0.003294 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 8 | 8 | B.1.1.70 | 0.002729 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 8 | 8 | B.1.110.3 | 0.005747 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 8 | 8 | B.1.177.81 | 0.001515 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 8 | 8 | B.1.517 | 0.003416 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 7 | 7 | AY.118 | 0.000439 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 7 | 7 | AY.41 | 0.002058 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 7 | 7 | B.1.1.464 | 0.010309 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 7 | 7 | B.1.234 | 0.000924 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 6 | 7 | B.1.466.2 | 0.002347 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctA | 1 | 7 | B.1.466.2 | 0.000391 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 6 | 6 | AY.46.6 | 0.000433 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 6 | 6 | AY.51 | 0.005455 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 5 | 6 | AY.9 | 0.000338 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctA | 1 | 6 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 6 | 6 | AY.99 | 0.006296 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 6 | 6 | B.1.177.4 | 0.001266 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 6 | 6 | B.1.258.3 | 0.01005 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 6 | 6 | B.1.525 | 0.000679 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 6 | 6 | B.1.595 | 0.001566 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 5 | 6 | P.1.14 | 0.000239 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctA | 1 | 6 | P.1.14 | 0.000048 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 5 | 5 | B.1.1.153 | 0.005476 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 5 | 5 | B.1.1.63 | 0.001929 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 5 | 5 | B.1.177.21 | 0.000382 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 5 | 5 | B.1.311 | 0.001373 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 5 | 5 | C.14 | 0.021645 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 5 | 5 | P.1.16 | 0.001871 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 4 | 4 | A.23.1 | 0.002817 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 4 | 4 | AY.107 | 0.001864 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 4 | 4 | B.1.1.344 | 0.043011 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 4 | 4 | B.1.1.39 | 0.002039 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 4 | 4 | B.1.1.434 | 0.001394 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 4 | 4 | B.1.177.16 | 0.002658 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 4 | 4 | B.1.36.17 | 0.001976 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 4 | 4 | B.1.36.29 | 0.002069 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 4 | 4 | B.1.36.36 | 0.002408 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 4 | 4 | B.1.438.1 | 0.000429 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 4 | 4 | P.1.10 | 0.001078 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | AD.2 | 0.000657 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | AY.108 | 0.003308 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | AY.16.1 | 0.00141 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 3 | AY.54 | 0.000191 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctA | 1 | 3 | AY.54 | 0.000095 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | AY.55 | 0.002752 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | AY.68 | 0.000821 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | AY.8 | 0.001818 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | AY.84 | 0.001312 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | B.1.1.277 | 0.002276 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | B.1.1.37 | 0.000579 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | B.1.1.518 | 0.018987 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | B.1.1.524 | 0.0625 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | B.1.124 | 0.023438 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | B.1.177.12 | 0.000455 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | B.1.177.54 | 0.001819 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | B.1.223 | 0.008333 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | B.1.236 | 0.00616 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | B.1.240 | 0.000647 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | B.1.258.20 | 0.047619 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | B.1.351.2 | 0.000908 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | B.1.399 | 0.005803 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | B.1.409 | 0.002344 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | B.1.544 | 0.018072 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | B.1.551 | 0.003871 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | B.3 | 0.002492 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | C.37.1 | 0.007853 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 2 | A.2 | 0.001324 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 2 | AY.109 | 0.001479 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 2 | AY.60 | 0.001876 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 2 | AZ.3 | 0.00304 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 2 | B.1.1.137 | 0.025 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 2 | B.1.1.316 | 0.00185 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 2 | B.1.1.523 | 0.003125 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctA | 1 | 2 | B.1.1.528 | 0.004808 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 2 | B.1.1.528 | 0.004808 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 2 | B.1.128 | 0.001271 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 2 | B.1.157 | 0.00597 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 2 | B.1.160.16 | 0.001859 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 2 | B.1.279 | 0.001027 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 2 | B.1.36.27 | 0.001527 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 2 | B.1.416 | 0.002538 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 2 | B.1.471 | 0.005464 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 2 | B.1.509 | 0.001732 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 2 | B.1.577 | 0.001375 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 2 | B.4 | 0.004415 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 2 | B.45 | 0.007663 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 2 | C.36.3.1 | 0.005435 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 2 | P.1.1 | 0.000318 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctA | 1 | 2 | P.1.1 | 0.000318 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 2 | P.1.13 | 0.001797 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.1.158 | 0.012195 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctA | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.1.180 | 0.010753 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.1.193 | 0.111111 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.1.229 | 0.005747 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.1.261 | 0.008621 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.1.308 | 0.011765 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.1.362 | 0.005618 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.1.396 | 0.045455 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.1.433 | 0.001425 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.1.62 | 0.027027 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.1.74 | 0.00431 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.120 | 0.007692 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.142 | 0.002899 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.177.28 | 0.007407 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.182 | 0.007246 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.203 | 0.0625 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.233 | 0.014085 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctA | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.258.2 | 0.004505 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.264.1 | 0.047619 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.293 | 0.0125 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.344 | 0.008197 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.36.21 | 0.00216 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.372 | 0.010989 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.425 | 0.002994 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.478 | 0.011765 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.494 | 0.034483 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.543 | 0.01 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.549 | 0.007194 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.1.635 | 0.017544 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | P.1.10.1 | 0.00813 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | P.4 | 0.003802 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | P.6 | 0.003145 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | W.1 | 0.008696 |
ORF1ab/nsp2 | 550 | L550L | ctC | ctT | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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