CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = L501F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2501L501FL681FnonsynCttTtt789178890.9997472306-2308
ORF1ab/nsp2501L501FL681FnonsynCtTTtC789120.0002534532306-2308

Details of the mutation L501F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2501L501FCttTtt78897891All0.001509
ORF1ab/nsp2501L501FCtTTtC27891All0
ORF1ab/nsp2501L501FCttTtt28522852B.1.1.70.002553
ORF1ab/nsp2501L501FCttTtt728728AY.40.001133
ORF1ab/nsp2501L501FCttTtt400400B.1.6250.941176
ORF1ab/nsp2501L501FCttTtt356357B.1.1600.011103
ORF1ab/nsp2501L501FCtTTtC1357B.1.1600.000031
ORF1ab/nsp2501L501FCttTtt354354B.1.617.20.001333
ORF1ab/nsp2501L501FCttTtt323323AY.430.001431
ORF1ab/nsp2501L501FCttTtt223223AY.90.015074
ORF1ab/nsp2501L501FCttTtt126126AY.1170.010649
ORF1ab/nsp2501L501FCttTtt113113B.1.20.000995
ORF1ab/nsp2501L501FCttTtt112112B.1.10.002032
ORF1ab/nsp2501L501FCttTtt112112B.1.3510.003329
ORF1ab/nsp2501L501FCttTtt110110B.10.001008
ORF1ab/nsp2501L501FCttTtt9797B.1.36.90.311897
ORF1ab/nsp2501L501FCttTtt9393P.20.017357
ORF1ab/nsp2501L501FCttTtt8787AY.440.00053
ORF1ab/nsp2501L501FCttTtt8585AY.390.0021
ORF1ab/nsp2501L501FCttTtt7272AY.250.000433
ORF1ab/nsp2501L501FCttTtt6868AY.1020.001803
ORF1ab/nsp2501L501FCttTtt6363B.1.177.860.011558
ORF1ab/nsp2501L501FCttTtt5959AY.1000.002714
ORF1ab/nsp2501L501FCttTtt5858B.1.1.280.018052
ORF1ab/nsp2501L501FCttTtt5757B.1.4270.002878
ORF1ab/nsp2501L501FCttTtt5757P.10.000898
ORF1ab/nsp2501L501FCttTtt4646AY.1030.000286
ORF1ab/nsp2501L501FCttTtt4444AY.4.20.000954
ORF1ab/nsp2501L501FCttTtt4141AY.340.003976
ORF1ab/nsp2501L501FCttTtt4040AY.30.000398
ORF1ab/nsp2501L501FCttTtt3939AY.4.2.10.00581
ORF1ab/nsp2501L501FCttTtt3939B.1.1770.000514
ORF1ab/nsp2501L501FCttTtt2929AA.10.210145
ORF1ab/nsp2501L501FCttTtt2828AY.290.000442
ORF1ab/nsp2501L501FCttTtt2626AY.50.000537
ORF1ab/nsp2501L501FCttTtt2424B.1.2340.003167
ORF1ab/nsp2501L501FCttTtt2424B.1.360.003502
ORF1ab/nsp2501L501FCttTtt2323AY.1190.000812
ORF1ab/nsp2501L501FCttTtt2222AD.2.11
ORF1ab/nsp2501L501FCttTtt2222B.1.6370.001608
ORF1ab/nsp2501L501FCttTtt2121AY.1130.00299
ORF1ab/nsp2501L501FCttTtt2121AY.39.10.000832
ORF1ab/nsp2501L501FCttTtt2020B.1.4290.000471
ORF1ab/nsp2501L501FCttTtt1919AY.420.000764
ORF1ab/nsp2501L501FCttTtt1919B.1.177.600.00415
ORF1ab/nsp2501L501FCttTtt1919B.1.2430.001322
ORF1ab/nsp2501L501FCttTtt1919C.36.30.010777
ORF1ab/nsp2501L501FCttTtt1818AY.260.00051
ORF1ab/nsp2501L501FCttTtt1818AY.880.015915
ORF1ab/nsp2501L501FCttTtt1717A0.006579
ORF1ab/nsp2501L501FCttTtt1616AY.3.10.001364
ORF1ab/nsp2501L501FCttTtt1616B.1.177.210.001224
ORF1ab/nsp2501L501FCttTtt1616B.1.5260.000376
ORF1ab/nsp2501L501FCttTtt1414N.50.024735
ORF1ab/nsp2501L501FCttTtt1313AY.330.000868
ORF1ab/nsp2501L501FCttTtt1313AY.5.40.003597
ORF1ab/nsp2501L501FCttTtt1313B.1.177.710.131313
ORF1ab/nsp2501L501FCttTtt1313B.1.177.80.009782
ORF1ab/nsp2501L501FCttTtt1212R.10.00108
ORF1ab/nsp2501L501FCttTtt1111AY.1070.005126
ORF1ab/nsp2501L501FCttTtt1111AY.1090.008136
ORF1ab/nsp2501L501FCttTtt1111B.1.2210.000781
ORF1ab/nsp2501L501FCttTtt1010B.1.5960.000871
ORF1ab/nsp2501L501FCttTtt99A.110.529412
ORF1ab/nsp2501L501FCttTtt99AY.470.00028
ORF1ab/nsp2501L501FCttTtt99AY.98.10.000436
ORF1ab/nsp2501L501FCttTtt99B.1.1.510.015464
ORF1ab/nsp2501L501FCttTtt99B.1.1.5190.000357
ORF1ab/nsp2501L501FCttTtt88AY.200.000311
ORF1ab/nsp2501L501FCttTtt88AY.300.003166
ORF1ab/nsp2501L501FCttTtt88B.1.1.1570.007306
ORF1ab/nsp2501L501FCttTtt88B.1.177.440.004152
ORF1ab/nsp2501L501FCttTtt77AY.1050.004502
ORF1ab/nsp2501L501FCttTtt77AY.9.20.000257
ORF1ab/nsp2501L501FCttTtt77B.1.1.3060.003069
ORF1ab/nsp2501L501FCttTtt77B.1.930.006536
ORF1ab/nsp2501L501FCttTtt77P.1.100.001886
ORF1ab/nsp2501L501FCttTtt66A.23.10.004225
ORF1ab/nsp2501L501FCttTtt66AY.320.003195
ORF1ab/nsp2501L501FCttTtt66AY.540.000572
ORF1ab/nsp2501L501FCttTtt66AY.790.007264
ORF1ab/nsp2501L501FCttTtt66AY.850.002563
ORF1ab/nsp2501L501FCttTtt66B.1.1280.003812
ORF1ab/nsp2501L501FCttTtt66B.1.177.770.004357
ORF1ab/nsp2501L501FCttTtt66B.1.617.10.000774
ORF1ab/nsp2501L501FCttTtt66C.370.000696
ORF1ab/nsp2501L501FCttTtt66P.1.140.000287
ORF1ab/nsp2501L501FCttTtt66P.1.150.001394
ORF1ab/nsp2501L501FCttTtt55AY.1160.001434
ORF1ab/nsp2501L501FCttTtt55AY.1180.000313
ORF1ab/nsp2501L501FCttTtt55AY.230.000349
ORF1ab/nsp2501L501FCttTtt55AY.460.00052
ORF1ab/nsp2501L501FCttTtt55AY.46.50.000992
ORF1ab/nsp2501L501FCttTtt55B0.000639
ORF1ab/nsp2501L501FCttTtt55B.1.1.1700.006234
ORF1ab/nsp2501L501FCttTtt55B.1.1.3970.011261
ORF1ab/nsp2501L501FCttTtt55B.1.1.4340.001743
ORF1ab/nsp2501L501FCttTtt55B.1.177.230.016181
ORF1ab/nsp2501L501FCttTtt55B.1.3110.001373
ORF1ab/nsp2501L501FCttTtt55B.1.5170.002135
ORF1ab/nsp2501L501FCttTtt55B.1.5650.004052
ORF1ab/nsp2501L501FCttTtt55P.1.70.001596
ORF1ab/nsp2501L501FCttTtt44AY.360.000593
ORF1ab/nsp2501L501FCttTtt44AY.4.50.00043
ORF1ab/nsp2501L501FCttTtt44AY.46.10.004107
ORF1ab/nsp2501L501FCttTtt44B.1.2580.000266
ORF1ab/nsp2501L501FCttTtt44B.1.258.140.003922
ORF1ab/nsp2501L501FCttTtt44B.1.3060.022857
ORF1ab/nsp2501L501FCttTtt44B.1.3990.007737
ORF1ab/nsp2501L501FCttTtt44D.20.0003
ORF1ab/nsp2501L501FCttTtt33AD.20.000657
ORF1ab/nsp2501L501FCttTtt33AY.1110.000549
ORF1ab/nsp2501L501FCttTtt33AY.120.10.000963
ORF1ab/nsp2501L501FCttTtt33AY.46.60.000217
ORF1ab/nsp2501L501FCttTtt33AY.650.001599
ORF1ab/nsp2501L501FCttTtt33AY.670.001393
ORF1ab/nsp2501L501FCttTtt33AY.750.000168
ORF1ab/nsp2501L501FCttTtt33AY.9.10.000251
ORF1ab/nsp2501L501FCttTtt33AY.980.000237
ORF1ab/nsp2501L501FCttTtt33B.1.1.2140.000166
ORF1ab/nsp2501L501FCttTtt33B.1.1.3160.002775
ORF1ab/nsp2501L501FCttTtt33B.1.1.330.001263
ORF1ab/nsp2501L501FCttTtt33B.1.466.20.001174
ORF1ab/nsp2501L501FCttTtt33P.1.120.001452
ORF1ab/nsp2501L501FCttTtt33Q.10.000379
ORF1ab/nsp2501L501FCttTtt33Q.30.000435
ORF1ab/nsp2501L501FCttTtt33Q.80.000495
ORF1ab/nsp2501L501FCttTtt22A.10.000564
ORF1ab/nsp2501L501FCttTtt22AY.10.000791
ORF1ab/nsp2501L501FCttTtt22AY.1010.000981
ORF1ab/nsp2501L501FCttTtt22AY.1200.000074
ORF1ab/nsp2501L501FCttTtt22AY.1210.000271
ORF1ab/nsp2501L501FCttTtt22AY.140.000176
ORF1ab/nsp2501L501FCttTtt22AY.160.000759
ORF1ab/nsp2501L501FCttTtt22AY.450.000243
ORF1ab/nsp2501L501FCttTtt22AY.46.30.001867
ORF1ab/nsp2501L501FCttTtt22AY.5.30.000675
ORF1ab/nsp2501L501FCttTtt22AY.610.00021
ORF1ab/nsp2501L501FCttTtt22AY.75.10.000361
ORF1ab/nsp2501L501FCttTtt22AY.99.20.000184
ORF1ab/nsp2501L501FCttTtt22B.1.1.10.000653
ORF1ab/nsp2501L501FCttTtt22B.1.1.3110.000716
ORF1ab/nsp2501L501FCttTtt22B.1.1.440.004819
ORF1ab/nsp2501L501FCttTtt22B.1.1.700.000682
ORF1ab/nsp2501L501FCttTtt22B.1.120.016
ORF1ab/nsp2501L501FCttTtt22B.1.1570.00597
ORF1ab/nsp2501L501FCttTtt22B.1.177.810.000379
ORF1ab/nsp2501L501FCttTtt22B.1.2360.004107
ORF1ab/nsp2501L501FCttTtt22B.1.2930.025
ORF1ab/nsp2501L501FCttTtt22B.1.351.30.001753
ORF1ab/nsp2501L501FCttTtt22B.1.36.120.019231
ORF1ab/nsp2501L501FCttTtt22B.1.36.290.001035
ORF1ab/nsp2501L501FCttTtt22B.1.36.380.003284
ORF1ab/nsp2501L501FCttTtt22B.1.4000.000858
ORF1ab/nsp2501L501FCttTtt22B.1.438.10.000215
ORF1ab/nsp2501L501FCttTtt22B.1.5750.000607
ORF1ab/nsp2501L501FCttTtt22B.1.6210.000177
ORF1ab/nsp2501L501FCttTtt22B.1.621.10.001012
ORF1ab/nsp2501L501FCttTtt22B.1.6310.006734
ORF1ab/nsp2501L501FCttTtt22C.1.20.008511
ORF1ab/nsp2501L501FCttTtt22C.160.002121
ORF1ab/nsp2501L501FCttTtt22C.350.001548
ORF1ab/nsp2501L501FCttTtt22P.1.40.001953
ORF1ab/nsp2501L501FCttTtt11A.2.50.000499
ORF1ab/nsp2501L501FCttTtt11AY.100.00053
ORF1ab/nsp2501L501FCttTtt11AY.1040.001984
ORF1ab/nsp2501L501FCttTtt11AY.110.001339
ORF1ab/nsp2501L501FCttTtt11AY.130.000161
ORF1ab/nsp2501L501FCttTtt11AY.190.00114
ORF1ab/nsp2501L501FCttTtt11AY.240.000431
ORF1ab/nsp2501L501FCttTtt11AY.4.10.000737
ORF1ab/nsp2501L501FCttTtt11AY.410.000294
ORF1ab/nsp2501L501FCttTtt11AY.550.000917
ORF1ab/nsp2501L501FCttTtt11AY.590.00053
ORF1ab/nsp2501L501FCttTtt11AY.690.000187
ORF1ab/nsp2501L501FCttTtt11AY.770.001127
ORF1ab/nsp2501L501FCttTtt11AY.910.00073
ORF1ab/nsp2501L501FCttTtt11AY.930.000273
ORF1ab/nsp2501L501FCttTtt11AY.940.000443
ORF1ab/nsp2501L501FCttTtt11AY.950.000761
ORF1ab/nsp2501L501FCttTtt11AY.970.001701
ORF1ab/nsp2501L501FCttTtt11AY.990.001049
ORF1ab/nsp2501L501FCttTtt11B.1.1.1210.002427
ORF1ab/nsp2501L501FCttTtt11B.1.1.1410.002012
ORF1ab/nsp2501L501FCttTtt11B.1.1.1640.005155
ORF1ab/nsp2501L501FCttTtt11B.1.1.1890.001513
ORF1ab/nsp2501L501FCttTtt11B.1.1.2180.007692
ORF1ab/nsp2501L501FCttTtt11B.1.1.2980.000862
ORF1ab/nsp2501L501FCttTtt11B.1.1.3170.000412
ORF1ab/nsp2501L501FCttTtt11B.1.1.3260.001761
ORF1ab/nsp2501L501FCttTtt11B.1.1.3510.002793
ORF1ab/nsp2501L501FCttTtt11B.1.1.3690.000446
ORF1ab/nsp2501L501FCttTtt11B.1.1.3730.02381
ORF1ab/nsp2501L501FCttTtt11B.1.1.4130.006897
ORF1ab/nsp2501L501FCttTtt11B.1.1.4200.001006
ORF1ab/nsp2501L501FCttTtt11B.1.1.4620.008621
ORF1ab/nsp2501L501FCttTtt11B.1.1.500.000679
ORF1ab/nsp2501L501FCttTtt11B.1.1.5230.001563
ORF1ab/nsp2501L501FCttTtt11B.1.1.560.017857
ORF1ab/nsp2501L501FCttTtt11B.1.1.830.00271
ORF1ab/nsp2501L501FCttTtt11B.1.1260.001276
ORF1ab/nsp2501L501FCttTtt11B.1.160.290.004219
ORF1ab/nsp2501L501FCttTtt11B.1.177.280.007407
ORF1ab/nsp2501L501FCttTtt11B.1.177.40.000211
ORF1ab/nsp2501L501FCttTtt11B.1.177.530.002392
ORF1ab/nsp2501L501FCttTtt11B.1.177.550.002331
ORF1ab/nsp2501L501FCttTtt11B.1.177.730.000566
ORF1ab/nsp2501L501FCttTtt11B.1.177.820.000477
ORF1ab/nsp2501L501FCttTtt11B.1.1890.004292
ORF1ab/nsp2501L501FCttTtt11B.1.214.20.0006
ORF1ab/nsp2501L501FCttTtt11B.1.214.30.007143
ORF1ab/nsp2501L501FCttTtt11B.1.2180.005155
ORF1ab/nsp2501L501FCttTtt11B.1.220.001318
ORF1ab/nsp2501L501FCttTtt11B.1.2390.001221
ORF1ab/nsp2501L501FCttTtt11B.1.258.170.000104
ORF1ab/nsp2501L501FCttTtt11B.1.3040.023256
ORF1ab/nsp2501L501FCttTtt11B.1.3130.006579
ORF1ab/nsp2501L501FCttTtt11B.1.3250.006897
ORF1ab/nsp2501L501FCttTtt11B.1.3280.03125
ORF1ab/nsp2501L501FCttTtt11B.1.36.220.001208
ORF1ab/nsp2501L501FCttTtt11B.1.3810.007812
ORF1ab/nsp2501L501FCttTtt11B.1.4040.001302
ORF1ab/nsp2501L501FCtTTtC11B.1.4560.003268
ORF1ab/nsp2501L501FCttTtt11B.1.4690.00361
ORF1ab/nsp2501L501FCttTtt11B.1.4970.000315
ORF1ab/nsp2501L501FCttTtt11B.1.5090.000866
ORF1ab/nsp2501L501FCttTtt11B.1.5380.008065
ORF1ab/nsp2501L501FCttTtt11B.1.5490.007194
ORF1ab/nsp2501L501FCttTtt11B.1.5510.00129
ORF1ab/nsp2501L501FCttTtt11B.1.5600.00463
ORF1ab/nsp2501L501FCttTtt11B.1.5610.000397
ORF1ab/nsp2501L501FCttTtt11B.1.5760.000907
ORF1ab/nsp2501L501FCttTtt11B.1.6200.000946
ORF1ab/nsp2501L501FCttTtt11B.1.90.006173
ORF1ab/nsp2501L501FCttTtt11C.36.3.10.002717
ORF1ab/nsp2501L501FCttTtt11P.1.10.000318
ORF1ab/nsp2501L501FCttTtt11P.1.20.001156
ORF1ab/nsp2501L501FCttTtt11P.40.003802