CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = L39L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp239L39LL219LsynCtgTtg1114167250.603626920-922
ORF1ab/nsp239L39LL219LsynctGctA1114125550.229333920-922
ORF1ab/nsp239L39LL219LsynctGctT1114118250.163809920-922
ORF1ab/nsp239L39LL219LsynctGctC11141350.00314155920-922
ORF1ab/nsp239L39LL219LsynCtGTtA1114110.0000897585920-922

Details of the mutation L39L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp239L39LCtgTtg672511141All0.001286
ORF1ab/nsp239L39LctGctA255511141All0.000489
ORF1ab/nsp239L39LctGctT182511141All0.000349
ORF1ab/nsp239L39LctGctC3511141All0.000007
ORF1ab/nsp239L39LCtGTtA111141All0
ORF1ab/nsp239L39LCtgTtg16571898B.1.1.70.001483
ORF1ab/nsp239L39LctGctT1651898B.1.1.70.000148
ORF1ab/nsp239L39LctGctA751898B.1.1.70.000067
ORF1ab/nsp239L39LctGctC11898B.1.1.70.000001
ORF1ab/nsp239L39LctGctA13051305B.1.36.270.996183
ORF1ab/nsp239L39LCtgTtg416627AY.40.000647
ORF1ab/nsp239L39LctGctT112627AY.40.000174
ORF1ab/nsp239L39LctGctA99627AY.40.000154
ORF1ab/nsp239L39LCtgTtg559561D.20.041948
ORF1ab/nsp239L39LctGctT2561D.20.00015
ORF1ab/nsp239L39LCtgTtg370418AY.440.002252
ORF1ab/nsp239L39LctGctT25418AY.440.000152
ORF1ab/nsp239L39LctGctA23418AY.440.00014
ORF1ab/nsp239L39LctGctT176411B.1.617.20.000663
ORF1ab/nsp239L39LCtgTtg124411B.1.617.20.000467
ORF1ab/nsp239L39LctGctA108411B.1.617.20.000407
ORF1ab/nsp239L39LctGctC3411B.1.617.20.000011
ORF1ab/nsp239L39LCtgTtg385403B.1.4290.009059
ORF1ab/nsp239L39LctGctA14403B.1.4290.000329
ORF1ab/nsp239L39LctGctT4403B.1.4290.000094
ORF1ab/nsp239L39LctGctA312323B.1.360.045521
ORF1ab/nsp239L39LctGctT8323B.1.360.001167
ORF1ab/nsp239L39LCtgTtg3323B.1.360.000438
ORF1ab/nsp239L39LCtgTtg240318AY.1030.00149
ORF1ab/nsp239L39LctGctT60318AY.1030.000373
ORF1ab/nsp239L39LctGctA18318AY.1030.000112
ORF1ab/nsp239L39LctGctT161266P.10.002536
ORF1ab/nsp239L39LCtgTtg47266P.10.00074
ORF1ab/nsp239L39LctGctA45266P.10.000709
ORF1ab/nsp239L39LctGctC13266P.10.000205
ORF1ab/nsp239L39LctGctT242250AY.98.10.01172
ORF1ab/nsp239L39LCtgTtg8250AY.98.10.000387
ORF1ab/nsp239L39LCtgTtg246248B.1.2580.016371
ORF1ab/nsp239L39LctGctT1248B.1.2580.000067
ORF1ab/nsp239L39LctGctA1248B.1.2580.000067
ORF1ab/nsp239L39LCtgTtg187228B.1.20.001647
ORF1ab/nsp239L39LctGctT25228B.1.20.00022
ORF1ab/nsp239L39LctGctA16228B.1.20.000141
ORF1ab/nsp239L39LCtgTtg188212B.1.1770.002476
ORF1ab/nsp239L39LctGctT13212B.1.1770.000171
ORF1ab/nsp239L39LctGctA11212B.1.1770.000145
ORF1ab/nsp239L39LCtgTtg212212B.1.4480.55643
ORF1ab/nsp239L39LCtgTtg128179B.10.001172
ORF1ab/nsp239L39LctGctT31179B.10.000284
ORF1ab/nsp239L39LctGctA20179B.10.000183
ORF1ab/nsp239L39LCtgTtg151159AY.1200.005614
ORF1ab/nsp239L39LctGctT8159AY.1200.000297
ORF1ab/nsp239L39LctGctT150150C.2.11
ORF1ab/nsp239L39LCtgTtg102141AY.30.001015
ORF1ab/nsp239L39LctGctT36141AY.30.000358
ORF1ab/nsp239L39LctGctA3141AY.30.00003
ORF1ab/nsp239L39LCtgTtg101117B.1.6370.00738
ORF1ab/nsp239L39LctGctT14117B.1.6370.001023
ORF1ab/nsp239L39LctGctA2117B.1.6370.000146
ORF1ab/nsp239L39LCtgTtg63115AY.430.000279
ORF1ab/nsp239L39LctGctT44115AY.430.000195
ORF1ab/nsp239L39LctGctA8115AY.430.000035
ORF1ab/nsp239L39LctGctT86114B.1.5960.007494
ORF1ab/nsp239L39LCtgTtg27114B.1.5960.002353
ORF1ab/nsp239L39LctGctA1114B.1.5960.000087
ORF1ab/nsp239L39LCtgTtg74102B.1.10.001342
ORF1ab/nsp239L39LctGctA19102B.1.10.000345
ORF1ab/nsp239L39LctGctT9102B.1.10.000163
ORF1ab/nsp239L39LCtgTtg6773B.1.1600.00209
ORF1ab/nsp239L39LctGctT673B.1.1600.000187
ORF1ab/nsp239L39LCtgTtg6771AY.200.002604
ORF1ab/nsp239L39LctGctT371AY.200.000117
ORF1ab/nsp239L39LctGctA171AY.200.000039
ORF1ab/nsp239L39LctGctA6266B.1.1.2140.003438
ORF1ab/nsp239L39LCtgTtg366B.1.1.2140.000166
ORF1ab/nsp239L39LctGctT166B.1.1.2140.000055
ORF1ab/nsp239L39LCtgTtg6465B.1.6090.030681
ORF1ab/nsp239L39LctGctA165B.1.6090.000479
ORF1ab/nsp239L39LctGctA6262A0.023994
ORF1ab/nsp239L39LCtgTtg6062C.160.063627
ORF1ab/nsp239L39LctGctT262C.160.002121
ORF1ab/nsp239L39LCtgTtg2955AY.390.000717
ORF1ab/nsp239L39LctGctT2555AY.390.000618
ORF1ab/nsp239L39LctGctA155AY.390.000025
ORF1ab/nsp239L39LctGctA5555AY.7.10.006199
ORF1ab/nsp239L39LCtgTtg3554AY.39.10.001386
ORF1ab/nsp239L39LctGctA1254AY.39.10.000475
ORF1ab/nsp239L39LctGctT754AY.39.10.000277
ORF1ab/nsp239L39LCtgTtg5252B.1.438.21
ORF1ab/nsp239L39LCtgTtg3751AY.250.000223
ORF1ab/nsp239L39LctGctT951AY.250.000054
ORF1ab/nsp239L39LctGctA551AY.250.00003
ORF1ab/nsp239L39LCtgTtg3850B.1.5260.000893
ORF1ab/nsp239L39LctGctT850B.1.5260.000188
ORF1ab/nsp239L39LctGctA450B.1.5260.000094
ORF1ab/nsp239L39LctGctT2749AY.1020.000716
ORF1ab/nsp239L39LCtgTtg1749AY.1020.000451
ORF1ab/nsp239L39LctGctA349AY.1020.00008
ORF1ab/nsp239L39LctGctC249AY.1020.000053
ORF1ab/nsp239L39LCtgTtg2949AY.99.20.002673
ORF1ab/nsp239L39LctGctA1849AY.99.20.001659
ORF1ab/nsp239L39LctGctT249AY.99.20.000184
ORF1ab/nsp239L39LCtgTtg4448AY.470.001369
ORF1ab/nsp239L39LctGctA248AY.470.000062
ORF1ab/nsp239L39LctGctT248AY.470.000062
ORF1ab/nsp239L39LCtgTtg3244B.1.6210.002833
ORF1ab/nsp239L39LctGctC944B.1.6210.000797
ORF1ab/nsp239L39LctGctA344B.1.6210.000266
ORF1ab/nsp239L39LctGctT2441Q.30.003481
ORF1ab/nsp239L39LCtgTtg1741Q.30.002466
ORF1ab/nsp239L39LCtgTtg3339AY.50.000681
ORF1ab/nsp239L39LctGctT539AY.50.000103
ORF1ab/nsp239L39LctGctA139AY.50.000021
ORF1ab/nsp239L39LctGctA2538AY.1000.00115
ORF1ab/nsp239L39LCtgTtg1138AY.1000.000506
ORF1ab/nsp239L39LctGctT238AY.1000.000092
ORF1ab/nsp239L39LCtgTtg3637AY.360.005336
ORF1ab/nsp239L39LctGctT137AY.360.000148
ORF1ab/nsp239L39LCtgTtg2635AY.260.000736
ORF1ab/nsp239L39LctGctT935AY.260.000255
ORF1ab/nsp239L39LctGctA3234AY.9.10.002679
ORF1ab/nsp239L39LctGctT134AY.9.10.000084
ORF1ab/nsp239L39LCtgTtg134AY.9.10.000084
ORF1ab/nsp239L39LCtgTtg3434B.1.258.140.033333
ORF1ab/nsp239L39LctGctA2833AY.290.000442
ORF1ab/nsp239L39LCtgTtg433AY.290.000063
ORF1ab/nsp239L39LctGctT133AY.290.000016
ORF1ab/nsp239L39LCtgTtg2733B.1.3510.000803
ORF1ab/nsp239L39LctGctT433B.1.3510.000119
ORF1ab/nsp239L39LctGctA233B.1.3510.000059
ORF1ab/nsp239L39LctGctT3131C.20.5
ORF1ab/nsp239L39LCtgTtg2230AY.610.002305
ORF1ab/nsp239L39LctGctT730AY.610.000733
ORF1ab/nsp239L39LctGctA130AY.610.000105
ORF1ab/nsp239L39LCtgTtg3030B.1.2430.002088
ORF1ab/nsp239L39LctGctT2429AY.330.001603
ORF1ab/nsp239L39LCtgTtg429AY.330.000267
ORF1ab/nsp239L39LctGctA129AY.330.000067
ORF1ab/nsp239L39LCtgTtg2428B.1.2210.001705
ORF1ab/nsp239L39LctGctT428B.1.2210.000284
ORF1ab/nsp239L39LctGctA1326B.1.1.5190.000516
ORF1ab/nsp239L39LCtgTtg1026B.1.1.5190.000397
ORF1ab/nsp239L39LctGctT326B.1.1.5190.000119
ORF1ab/nsp239L39LCtgTtg1726B.1.4270.000858
ORF1ab/nsp239L39LctGctA826B.1.4270.000404
ORF1ab/nsp239L39LctGctT126B.1.4270.00005
ORF1ab/nsp239L39LCtgTtg2424AY.1130.003417
ORF1ab/nsp239L39LctGctA1822AY.1210.002436
ORF1ab/nsp239L39LctGctT322AY.1210.000406
ORF1ab/nsp239L39LCtgTtg122AY.1210.000135
ORF1ab/nsp239L39LCtgTtg1721AY.4.20.000369
ORF1ab/nsp239L39LctGctA321AY.4.20.000065
ORF1ab/nsp239L39LctGctT121AY.4.20.000022
ORF1ab/nsp239L39LctGctT2121B.1.177.160.013953
ORF1ab/nsp239L39LCtgTtg1421P.1.140.000669
ORF1ab/nsp239L39LctGctT721P.1.140.000335
ORF1ab/nsp239L39LCtgTtg1717B.1.438.10.001823
ORF1ab/nsp239L39LCtgTtg1316B.1.1.280.004046
ORF1ab/nsp239L39LctGctA316B.1.1.280.000934
ORF1ab/nsp239L39LCtgTtg1315AY.75.10.002344
ORF1ab/nsp239L39LctGctT215AY.75.10.000361
ORF1ab/nsp239L39LCtgTtg1415B.1.1.3170.005764
ORF1ab/nsp239L39LctGctA115B.1.1.3170.000412
ORF1ab/nsp239L39LctGctT1415B.1.1.4340.00488
ORF1ab/nsp239L39LCtgTtg115B.1.1.4340.000349
ORF1ab/nsp239L39LctGctT1114AY.230.000767
ORF1ab/nsp239L39LCtgTtg314AY.230.000209
ORF1ab/nsp239L39LctGctT1414B.1.1.1551
ORF1ab/nsp239L39LctGctA1213AY.140.001056
ORF1ab/nsp239L39LCtgTtg113AY.140.000088
ORF1ab/nsp239L39LCtgTtg1113AY.90.000744
ORF1ab/nsp239L39LctGctT213AY.90.000135
ORF1ab/nsp239L39LctGctT913B.1.1.10.00294
ORF1ab/nsp239L39LCtgTtg413B.1.1.10.001307
ORF1ab/nsp239L39LCtgTtg1313B.1.4090.010156
ORF1ab/nsp239L39LctGctT612AY.9.20.00022
ORF1ab/nsp239L39LCtgTtg312AY.9.20.00011
ORF1ab/nsp239L39LctGctA312AY.9.20.00011
ORF1ab/nsp239L39LCtgTtg912B.1.2400.00194
ORF1ab/nsp239L39LctGctT312B.1.2400.000647
ORF1ab/nsp239L39LCtgTtg1112B.1.4990.011555
ORF1ab/nsp239L39LctGctT112B.1.4990.00105
ORF1ab/nsp239L39LctGctT1011AY.1060.003349
ORF1ab/nsp239L39LCtgTtg111AY.1060.000335
ORF1ab/nsp239L39LCtgTtg511AY.420.000201
ORF1ab/nsp239L39LctGctA511AY.420.000201
ORF1ab/nsp239L39LctGctC111AY.420.00004
ORF1ab/nsp239L39LCtgTtg911AY.450.001095
ORF1ab/nsp239L39LctGctC211AY.450.000243
ORF1ab/nsp239L39LCtgTtg1111AY.990.011542
ORF1ab/nsp239L39LctGctT1011B.1.1.3060.004384
ORF1ab/nsp239L39LCtgTtg111B.1.1.3060.000438
ORF1ab/nsp239L39LCtgTtg1011C.370.001161
ORF1ab/nsp239L39LctGctA111C.370.000116
ORF1ab/nsp239L39LctGctT1010B.1.177.690.014837
ORF1ab/nsp239L39LCtgTtg1010B.1.6000.05848
ORF1ab/nsp239L39LctGctT49AY.29.10.000882
ORF1ab/nsp239L39LCtgTtg39AY.29.10.000662
ORF1ab/nsp239L39LctGctA29AY.29.10.000441
ORF1ab/nsp239L39LctGctA79B.1.177.440.003633
ORF1ab/nsp239L39LCtgTtg29B.1.177.440.001038
ORF1ab/nsp239L39LCtgTtg69B.1.3690.001711
ORF1ab/nsp239L39LctGctT39B.1.3690.000856
ORF1ab/nsp239L39LctGctA89B.1.4700.011236
ORF1ab/nsp239L39LCtgTtg19B.1.4700.001404
ORF1ab/nsp239L39LCtgTtg99C.230.052326
ORF1ab/nsp239L39LCtgTtg99P.1.150.002091
ORF1ab/nsp239L39LCtgTtg78AY.120.002212
ORF1ab/nsp239L39LctGctA18AY.120.000316
ORF1ab/nsp239L39LCtgTtg88B.1.1.390.004077
ORF1ab/nsp239L39LCtgTtg68B.1.258.170.000624
ORF1ab/nsp239L39LctGctT28B.1.258.170.000208
ORF1ab/nsp239L39LctGctT88P.60.025157
ORF1ab/nsp239L39LCtgTtg77AD.20.001533
ORF1ab/nsp239L39LCtgTtg47AY.1190.000141
ORF1ab/nsp239L39LctGctT27AY.1190.000071
ORF1ab/nsp239L39LctGctA17AY.1190.000035
ORF1ab/nsp239L39LctGctA27AY.340.000194
ORF1ab/nsp239L39LCtgTtg27AY.340.000194
ORF1ab/nsp239L39LctGctT27AY.340.000194
ORF1ab/nsp239L39LctGctC17AY.340.000097
ORF1ab/nsp239L39LctGctT37AY.460.000312
ORF1ab/nsp239L39LctGctC27AY.460.000208
ORF1ab/nsp239L39LCtgTtg17AY.460.000104
ORF1ab/nsp239L39LctGctA17AY.460.000104
ORF1ab/nsp239L39LctGctT67AY.5.40.00166
ORF1ab/nsp239L39LctGctA17AY.5.40.000277
ORF1ab/nsp239L39LCtgTtg57AY.60.000206
ORF1ab/nsp239L39LctGctT17AY.60.000041
ORF1ab/nsp239L39LctGctA17AY.60.000041
ORF1ab/nsp239L39LCtgTtg57AY.750.00028
ORF1ab/nsp239L39LctGctT27AY.750.000112
ORF1ab/nsp239L39LctGctT67B.1.2360.01232
ORF1ab/nsp239L39LCtgTtg17B.1.2360.002053
ORF1ab/nsp239L39LCtgTtg67B.1.36.290.003104
ORF1ab/nsp239L39LctGctT17B.1.36.290.000517
ORF1ab/nsp239L39LCtgTtg67Q.10.000758
ORF1ab/nsp239L39LctGctT17Q.10.000126
ORF1ab/nsp239L39LctGctT36AY.1180.000188
ORF1ab/nsp239L39LCtgTtg26AY.1180.000125
ORF1ab/nsp239L39LctGctA16AY.1180.000063
ORF1ab/nsp239L39LCtgTtg66AY.600.005629
ORF1ab/nsp239L39LCtgTtg66AY.70.001176
ORF1ab/nsp239L39LCtgTtg46B.1.4380.026144
ORF1ab/nsp239L39LctGctT26B.1.4380.013072
ORF1ab/nsp239L39LctGctA66B.1.4680.034286
ORF1ab/nsp239L39LCtgTtg66Q.80.000989
ORF1ab/nsp239L39LCtgTtg25AY.1170.000169
ORF1ab/nsp239L39LctGctT25AY.1170.000169
ORF1ab/nsp239L39LctGctA15AY.1170.000085
ORF1ab/nsp239L39LCtgTtg55B.1.1.1760.002197
ORF1ab/nsp239L39LctGctT25B.1.1.250.001137
ORF1ab/nsp239L39LCtgTtg25B.1.1.250.001137
ORF1ab/nsp239L39LctGctA15B.1.1.250.000569
ORF1ab/nsp239L39LCtgTtg45B.1.1.2770.003035
ORF1ab/nsp239L39LctGctT15B.1.1.2770.000759
ORF1ab/nsp239L39LctGctT35B.1.1.2840.000322
ORF1ab/nsp239L39LCtgTtg25B.1.1.2840.000215
ORF1ab/nsp239L39LCtgTtg45B.1.1.630.001543
ORF1ab/nsp239L39LCtGTtA15B.1.1.630.000386
ORF1ab/nsp239L39LCtgTtg55B.1.177.620.005959
ORF1ab/nsp239L39LCtgTtg45B.1.177.70.000659
ORF1ab/nsp239L39LctGctA15B.1.177.70.000165
ORF1ab/nsp239L39LCtgTtg55B.1.3110.001373
ORF1ab/nsp239L39LCtgTtg55B.1.90.030864
ORF1ab/nsp239L39LCtgTtg45C.360.003643
ORF1ab/nsp239L39LctGctA15C.360.000911
ORF1ab/nsp239L39LCtgTtg55P.1.70.001596
ORF1ab/nsp239L39LctGctT24AY.240.000862
ORF1ab/nsp239L39LctGctA14AY.240.000431
ORF1ab/nsp239L39LCtgTtg14AY.240.000431
ORF1ab/nsp239L39LCtgTtg34AY.3.10.000256
ORF1ab/nsp239L39LctGctT14AY.3.10.000085
ORF1ab/nsp239L39LctGctA44AY.690.000747
ORF1ab/nsp239L39LctGctT34AY.770.003382
ORF1ab/nsp239L39LctGctA14AY.770.001127
ORF1ab/nsp239L39LCtgTtg34B.1.1.2160.002671
ORF1ab/nsp239L39LctGctT14B.1.1.2160.00089
ORF1ab/nsp239L39LctGctT44B.1.1.2220.000816
ORF1ab/nsp239L39LCtgTtg44B.1.1.4280.037736
ORF1ab/nsp239L39LCtgTtg44B.1.1.4850.066667
ORF1ab/nsp239L39LCtgTtg44B.1.110.30.002874
ORF1ab/nsp239L39LctGctT24B.1.177.210.000153
ORF1ab/nsp239L39LCtgTtg24B.1.177.210.000153
ORF1ab/nsp239L39LCtgTtg44B.1.177.790.009368
ORF1ab/nsp239L39LCtgTtg44B.1.177.860.000734
ORF1ab/nsp239L39LctGctT24B.1.2340.000264
ORF1ab/nsp239L39LctGctA24B.1.2340.000264
ORF1ab/nsp239L39LCtgTtg44B.1.2650.005083
ORF1ab/nsp239L39LCtgTtg44B.1.5580.018265
ORF1ab/nsp239L39LCtgTtg34P.20.00056
ORF1ab/nsp239L39LctGctA14P.20.000187
ORF1ab/nsp239L39LctGctT23AY.1090.001479
ORF1ab/nsp239L39LctGctA13AY.1090.00074
ORF1ab/nsp239L39LCtgTtg23AY.1140.000462
ORF1ab/nsp239L39LctGctA13AY.1140.000231
ORF1ab/nsp239L39LCtgTtg33AY.1160.00086
ORF1ab/nsp239L39LctGctA13AY.130.000161
ORF1ab/nsp239L39LctGctT13AY.130.000161
ORF1ab/nsp239L39LCtgTtg13AY.130.000161
ORF1ab/nsp239L39LCtgTtg23AY.16.10.00094
ORF1ab/nsp239L39LctGctT13AY.16.10.00047
ORF1ab/nsp239L39LCtgTtg33AY.270.000194
ORF1ab/nsp239L39LctGctT33AY.34.10.00153
ORF1ab/nsp239L39LCtgTtg23AY.350.000466
ORF1ab/nsp239L39LctGctT13AY.350.000233
ORF1ab/nsp239L39LCtgTtg33AY.4.2.10.000447
ORF1ab/nsp239L39LctGctT33AY.46.30.002801
ORF1ab/nsp239L39LctGctT23AY.46.60.000144
ORF1ab/nsp239L39LCtgTtg13AY.46.60.000072
ORF1ab/nsp239L39LCtgTtg23AY.5.30.000675
ORF1ab/nsp239L39LctGctT13AY.5.30.000337
ORF1ab/nsp239L39LctGctA23AY.980.000158
ORF1ab/nsp239L39LCtgTtg13AY.980.000079
ORF1ab/nsp239L39LCtgTtg33B.1.1.1870.026549
ORF1ab/nsp239L39LctGctA23B.1.1.330.000842
ORF1ab/nsp239L39LctGctT13B.1.1.330.000421
ORF1ab/nsp239L39LCtgTtg33B.1.1.3760.017857
ORF1ab/nsp239L39LctGctA33B.1.2600.010033
ORF1ab/nsp239L39LCtgTtg33B.1.36.310.005254
ORF1ab/nsp239L39LCtgTtg23B.1.466.20.000782
ORF1ab/nsp239L39LctGctT13B.1.466.20.000391
ORF1ab/nsp239L39LCtgTtg23B.1.5950.000522
ORF1ab/nsp239L39LctGctA13B.1.5950.000261
ORF1ab/nsp239L39LCtgTtg22AP.10.003003
ORF1ab/nsp239L39LCtgTtg22AY.120.20.002571
ORF1ab/nsp239L39LCtgTtg22AY.46.50.000397
ORF1ab/nsp239L39LCtgTtg22AY.620.000871
ORF1ab/nsp239L39LCtgTtg22AY.650.001066
ORF1ab/nsp239L39LCtgTtg22AY.680.000547
ORF1ab/nsp239L39LctGctA22AY.790.002421
ORF1ab/nsp239L39LctGctA22AY.800.002257
ORF1ab/nsp239L39LCtgTtg12AY.840.000437
ORF1ab/nsp239L39LctGctA12AY.840.000437
ORF1ab/nsp239L39LCtgTtg22AY.950.001522
ORF1ab/nsp239L39LCtgTtg22B.1.1.1530.002191
ORF1ab/nsp239L39LCtgTtg12B.1.1.1890.001513
ORF1ab/nsp239L39LctGctT12B.1.1.1890.001513
ORF1ab/nsp239L39LCtgTtg22B.1.1.2630.003115
ORF1ab/nsp239L39LCtgTtg12B.1.1.3110.000358
ORF1ab/nsp239L39LctGctT12B.1.1.3110.000358
ORF1ab/nsp239L39LCtgTtg22B.1.1.3120.003824
ORF1ab/nsp239L39LCtgTtg22B.1.1.3150.016949
ORF1ab/nsp239L39LCtgTtg22B.1.1.3890.012121
ORF1ab/nsp239L39LCtgTtg22B.1.1.4660.017391
ORF1ab/nsp239L39LCtgTtg22B.1.1.500.001358
ORF1ab/nsp239L39LCtgTtg12B.1.1.540.003021
ORF1ab/nsp239L39LctGctT12B.1.1.540.003021
ORF1ab/nsp239L39LCtgTtg22B.1.1040.00738
ORF1ab/nsp239L39LctGctA22B.1.1420.005797
ORF1ab/nsp239L39LctGctT22B.1.1470.001512
ORF1ab/nsp239L39LCtgTtg22B.1.177.360.032258
ORF1ab/nsp239L39LCtgTtg22B.1.177.540.001213
ORF1ab/nsp239L39LCtgTtg22B.1.177.560.001335
ORF1ab/nsp239L39LctGctT22B.1.177.600.000437
ORF1ab/nsp239L39LCtgTtg22B.1.1950.01005
ORF1ab/nsp239L39LCtgTtg22B.1.3490.00143
ORF1ab/nsp239L39LctGctA22B.1.36.160.002849
ORF1ab/nsp239L39LCtgTtg22B.1.36.80.002
ORF1ab/nsp239L39LctGctT22B.1.3750.001639
ORF1ab/nsp239L39LCtgTtg22B.1.3930.057143
ORF1ab/nsp239L39LCtgTtg22B.1.429.10.024096
ORF1ab/nsp239L39LctGctA22B.1.4660.046512
ORF1ab/nsp239L39LctGctA12B.1.4800.002488
ORF1ab/nsp239L39LCtgTtg12B.1.4800.002488
ORF1ab/nsp239L39LCtgTtg22B.1.5250.000226
ORF1ab/nsp239L39LctGctT22B.1.5270.007407
ORF1ab/nsp239L39LctGctT12B.1.617.10.000129
ORF1ab/nsp239L39LCtgTtg12B.1.617.10.000129
ORF1ab/nsp239L39LCtgTtg22B.1.930.001867
ORF1ab/nsp239L39LctGctT12P.1.10.000318
ORF1ab/nsp239L39LCtgTtg12P.1.10.000318
ORF1ab/nsp239L39LCtgTtg22P.1.170.000324
ORF1ab/nsp239L39LctGctT22P.1.80.009569
ORF1ab/nsp239L39LCtgTtg11A.10.000282
ORF1ab/nsp239L39LctGctT11A.2.30.004739
ORF1ab/nsp239L39LCtgTtg11A.2.50.000499
ORF1ab/nsp239L39LCtgTtg11A.2.5.30.010309
ORF1ab/nsp239L39LctGctA11A.280.002646
ORF1ab/nsp239L39LctGctA11AY.10.000396
ORF1ab/nsp239L39LctGctT11AY.1050.000643
ORF1ab/nsp239L39LCtgTtg11AY.1110.000183
ORF1ab/nsp239L39LctGctT11AY.1150.005208
ORF1ab/nsp239L39LCtgTtg11AY.280.00189
ORF1ab/nsp239L39LctGctA11AY.320.000532
ORF1ab/nsp239L39LCtgTtg11AY.4.10.000737
ORF1ab/nsp239L39LCtgTtg11AY.4.40.000409
ORF1ab/nsp239L39LctGctT11AY.4.50.000107
ORF1ab/nsp239L39LCtgTtg11AY.410.000294
ORF1ab/nsp239L39LctGctT11AY.46.10.001027
ORF1ab/nsp239L39LCtgTtg11AY.480.000465
ORF1ab/nsp239L39LCtgTtg11AY.520.000814
ORF1ab/nsp239L39LctGctA11AY.540.000095
ORF1ab/nsp239L39LCtgTtg11AY.550.000917
ORF1ab/nsp239L39LCtgTtg11AY.580.000907
ORF1ab/nsp239L39LctGctT11AY.7.20.000559
ORF1ab/nsp239L39LctGctT11AY.700.000209
ORF1ab/nsp239L39LCtgTtg11AY.730.000665
ORF1ab/nsp239L39LCtgTtg11AY.740.000116
ORF1ab/nsp239L39LCtgTtg11AY.850.000427
ORF1ab/nsp239L39LCtgTtg11AY.880.000884
ORF1ab/nsp239L39LCtgTtg11AY.91.10.004065
ORF1ab/nsp239L39LCtgTtg11AY.960.002075
ORF1ab/nsp239L39LCtgTtg11AZ.20.000821
ORF1ab/nsp239L39LCtgTtg11B.1.1.1280.007092
ORF1ab/nsp239L39LCtgTtg11B.1.1.1410.002012
ORF1ab/nsp239L39LctGctT11B.1.1.2030.016949
ORF1ab/nsp239L39LCtgTtg11B.1.1.2100.005714
ORF1ab/nsp239L39LCtgTtg11B.1.1.2200.001859
ORF1ab/nsp239L39LCtgTtg11B.1.1.2790.001121
ORF1ab/nsp239L39LctGctA11B.1.1.2860.002899
ORF1ab/nsp239L39LctGctA11B.1.1.3180.000302
ORF1ab/nsp239L39LCtgTtg11B.1.1.3370.003597
ORF1ab/nsp239L39LCtgTtg11B.1.1.3560.008547
ORF1ab/nsp239L39LCtgTtg11B.1.1.3970.002252
ORF1ab/nsp239L39LCtgTtg11B.1.1.4140.142857
ORF1ab/nsp239L39LctGctT11B.1.1.5260.003546
ORF1ab/nsp239L39LCtgTtg11B.1.1.710.006061
ORF1ab/nsp239L39LCtgTtg11B.1.1110.001175
ORF1ab/nsp239L39LctGctA11B.1.160.230.004831
ORF1ab/nsp239L39LctGctA11B.1.177.150.000631
ORF1ab/nsp239L39LCtgTtg11B.1.177.200.001517
ORF1ab/nsp239L39LCtgTtg11B.1.177.320.00135
ORF1ab/nsp239L39LCtgTtg11B.1.177.450.000381
ORF1ab/nsp239L39LCtgTtg11B.1.177.460.000918
ORF1ab/nsp239L39LctGctT11B.1.177.480.003125
ORF1ab/nsp239L39LctGctT11B.1.177.510.004566
ORF1ab/nsp239L39LctGctA11B.1.177.650.000665
ORF1ab/nsp239L39LCtgTtg11B.1.177.730.000566
ORF1ab/nsp239L39LctGctA11B.1.1900.01
ORF1ab/nsp239L39LCtgTtg11B.1.2120.016667
ORF1ab/nsp239L39LCtgTtg11B.1.2180.005155
ORF1ab/nsp239L39LctGctA11B.1.220.001318
ORF1ab/nsp239L39LctGctT11B.1.2290.009709
ORF1ab/nsp239L39LCtgTtg11B.1.2510.021739
ORF1ab/nsp239L39LCtgTtg11B.1.264.10.047619
ORF1ab/nsp239L39LctGctA11B.1.3320.003497
ORF1ab/nsp239L39LCtgTtg11B.1.3580.05
ORF1ab/nsp239L39LCtgTtg11B.1.36.10.00114
ORF1ab/nsp239L39LCtgTtg11B.1.36.170.000494
ORF1ab/nsp239L39LctGctA11B.1.36.220.001208
ORF1ab/nsp239L39LctGctA11B.1.36.340.021277
ORF1ab/nsp239L39LCtgTtg11B.1.3660.004878
ORF1ab/nsp239L39LCtgTtg11B.1.3980.002976
ORF1ab/nsp239L39LctGctA11B.1.4080.00369
ORF1ab/nsp239L39LctGctA11B.1.4160.001269
ORF1ab/nsp239L39LCtgTtg11B.1.4240.008065
ORF1ab/nsp239L39LctGctT11B.1.4280.00102
ORF1ab/nsp239L39LCtgTtg11B.1.4390.005917
ORF1ab/nsp239L39LctGctA11B.1.4560.003268
ORF1ab/nsp239L39LCtgTtg11B.1.466.10.007194
ORF1ab/nsp239L39LctGctT11B.1.4950.009091
ORF1ab/nsp239L39LCtgTtg11B.1.5030.002488
ORF1ab/nsp239L39LCtgTtg11B.1.5050.004386
ORF1ab/nsp239L39LCtgTtg11B.1.5240.001406
ORF1ab/nsp239L39LctGctC11B.1.5310.083333
ORF1ab/nsp239L39LctGctT11B.1.5400.009709
ORF1ab/nsp239L39LCtgTtg11B.1.5440.006024
ORF1ab/nsp239L39LctGctA11B.1.5460.003704
ORF1ab/nsp239L39LCtgTtg11B.1.5640.000426
ORF1ab/nsp239L39LctGctT11B.1.5700.002941
ORF1ab/nsp239L39LctGctT11B.1.5770.000687
ORF1ab/nsp239L39LCtgTtg11B.1.5820.000491
ORF1ab/nsp239L39LctGctA11B.1.5880.00091
ORF1ab/nsp239L39LctGctA11B.1.5900.004545
ORF1ab/nsp239L39LCtgTtg11B.1.5990.00365
ORF1ab/nsp239L39LCtgTtg11B.1.619.10.000641
ORF1ab/nsp239L39LCtgTtg11B.1.621.10.000506
ORF1ab/nsp239L39LCtgTtg11B.1.6230.000536
ORF1ab/nsp239L39LCtgTtg11B.400.000364
ORF1ab/nsp239L39LCtgTtg11B.500.111111
ORF1ab/nsp239L39LctGctA11C.260.007353
ORF1ab/nsp239L39LctGctT11C.350.000774
ORF1ab/nsp239L39LCtgTtg11N.50.001767
ORF1ab/nsp239L39LctGctT11P.1.10.20.041667
ORF1ab/nsp239L39LctGctA11P.1.120.000484
ORF1ab/nsp239L39LctGctT11R.10.00009