CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = L266del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2266L266delL446deldelCTT---1102110211601-1603

Details of the mutation L266del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2266L266delCTT---11021102All0.000211
ORF1ab/nsp2266L266delCTT---208208B.1.1.1910.990476
ORF1ab/nsp2266L266delCTT---164164B.1.1.70.000147
ORF1ab/nsp2266L266delCTT---164164B.1.5731
ORF1ab/nsp2266L266delCTT---101101AY.40.000157
ORF1ab/nsp2266L266delCTT---7777AY.1030.000478
ORF1ab/nsp2266L266delCTT---4949AN.10.98
ORF1ab/nsp2266L266delCTT---3434B.1.10.000617
ORF1ab/nsp2266L266delCTT---3030AY.250.00018
ORF1ab/nsp2266L266delCTT---2121B.10.000192
ORF1ab/nsp2266L266delCTT---1414B.1.36.180.005882
ORF1ab/nsp2266L266delCTT---1212P.10.000189
ORF1ab/nsp2266L266delCTT---1111AY.430.000049
ORF1ab/nsp2266L266delCTT---1111B.1.617.20.000041
ORF1ab/nsp2266L266delCTT---1010AY.440.000061
ORF1ab/nsp2266L266delCTT---1010B.1.1600.000312
ORF1ab/nsp2266L266delCTT---1010B.1.20.000088
ORF1ab/nsp2266L266delCTT---88B.1.1.5190.000318
ORF1ab/nsp2266L266delCTT---77AY.4.50.000752
ORF1ab/nsp2266L266delCTT---77B.1.1.170.116667
ORF1ab/nsp2266L266delCTT---66B.1.1.3740.014252
ORF1ab/nsp2266L266delCTT---66B.1.1770.000079
ORF1ab/nsp2266L266delCTT---55AY.5.30.001687
ORF1ab/nsp2266L266delCTT---55B.1.1.3180.001509
ORF1ab/nsp2266L266delCTT---55B.1.1.370.000964
ORF1ab/nsp2266L266delCTT---55B.1.2210.000355
ORF1ab/nsp2266L266delCTT---55B.1.2340.00066
ORF1ab/nsp2266L266delCTT---55B.1.36.380.00821
ORF1ab/nsp2266L266delCTT---44AY.290.000063
ORF1ab/nsp2266L266delCTT---44AY.330.000267
ORF1ab/nsp2266L266delCTT---44AY.4.2.10.000596
ORF1ab/nsp2266L266delCTT---44AY.9.10.000335
ORF1ab/nsp2266L266delCTT---44AY.9.20.000147
ORF1ab/nsp2266L266delCTT---44B.1.1.330.001684
ORF1ab/nsp2266L266delCTT---44B.1.5260.000094
ORF1ab/nsp2266L266delCTT---33A.50.005769
ORF1ab/nsp2266L266delCTT---33AY.1200.000112
ORF1ab/nsp2266L266delCTT---33AY.70.000588
ORF1ab/nsp2266L266delCTT---33B.1.1.1940.014851
ORF1ab/nsp2266L266delCTT---33B.1.1.3480.002389
ORF1ab/nsp2266L266delCTT---22A0.000774
ORF1ab/nsp2266L266delCTT---22AY.1180.000125
ORF1ab/nsp2266L266delCTT---22AY.120.20.002571
ORF1ab/nsp2266L266delCTT---22AY.30.00002
ORF1ab/nsp2266L266delCTT---22AY.390.000049
ORF1ab/nsp2266L266delCTT---22AY.420.00008
ORF1ab/nsp2266L266delCTT---22AY.98.10.000097
ORF1ab/nsp2266L266delCTT---22B.1.1.2840.000215
ORF1ab/nsp2266L266delCTT---22B.1.2060.001631
ORF1ab/nsp2266L266delCTT---22B.1.2370.00995
ORF1ab/nsp2266L266delCTT---22B.1.2430.000139
ORF1ab/nsp2266L266delCTT---22B.1.3510.000059
ORF1ab/nsp2266L266delCTT---22B.1.351.20.000605
ORF1ab/nsp2266L266delCTT---22B.1.36.80.002
ORF1ab/nsp2266L266delCTT---22B.1.3690.00057
ORF1ab/nsp2266L266delCTT---22B.1.5200.043478
ORF1ab/nsp2266L266delCTT---22N.60.014184
ORF1ab/nsp2266L266delCTT---22P.20.000373
ORF1ab/nsp2266L266delCTT---11AY.1050.000643
ORF1ab/nsp2266L266delCTT---11AY.116.10.000311
ORF1ab/nsp2266L266delCTT---11AY.4.20.000022
ORF1ab/nsp2266L266delCTT---11AY.60.000041
ORF1ab/nsp2266L266delCTT---11AY.710.000475
ORF1ab/nsp2266L266delCTT---11AY.850.000427
ORF1ab/nsp2266L266delCTT---11AY.90.000068
ORF1ab/nsp2266L266delCTT---11AY.980.000079
ORF1ab/nsp2266L266delCTT---11B.1.1.2000.007463
ORF1ab/nsp2266L266delCTT---11B.1.1.2160.00089
ORF1ab/nsp2266L266delCTT---11B.1.1.280.000311
ORF1ab/nsp2266L266delCTT---11B.1.1.3350.012987
ORF1ab/nsp2266L266delCTT---11B.1.1.4480.002033
ORF1ab/nsp2266L266delCTT---11B.1.1.510.001718
ORF1ab/nsp2266L266delCTT---11B.1.1.540.003021
ORF1ab/nsp2266L266delCTT---11B.1.1.630.000386
ORF1ab/nsp2266L266delCTT---11B.1.110.30.000718
ORF1ab/nsp2266L266delCTT---11B.1.160.160.000929
ORF1ab/nsp2266L266delCTT---11B.1.1730.026316
ORF1ab/nsp2266L266delCTT---11B.1.177.120.000152
ORF1ab/nsp2266L266delCTT---11B.1.177.560.000668
ORF1ab/nsp2266L266delCTT---11B.1.221.10.002907
ORF1ab/nsp2266L266delCTT---11B.1.258.170.000104
ORF1ab/nsp2266L266delCTT---11B.1.3110.000275
ORF1ab/nsp2266L266delCTT---11B.1.36.160.001425
ORF1ab/nsp2266L266delCTT---11B.1.36.310.001751
ORF1ab/nsp2266L266delCTT---11B.1.3710.001122
ORF1ab/nsp2266L266delCTT---11B.1.4090.000781
ORF1ab/nsp2266L266delCTT---11B.1.438.10.000107
ORF1ab/nsp2266L266delCTT---11B.1.5600.00463
ORF1ab/nsp2266L266delCTT---11B.1.5610.000397
ORF1ab/nsp2266L266delCTT---11P.1.140.000048
ORF1ab/nsp2266L266delCTT---11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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