CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 266 | L266del | L446del | del | CTT | --- | 1102 | 1102 | 1 | 1601-1603 |
Details of the mutation L266del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1102 | 1102 | All | 0.000211 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 208 | 208 | B.1.1.191 | 0.990476 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 164 | 164 | B.1.1.7 | 0.000147 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 164 | 164 | B.1.573 | 1 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 101 | 101 | AY.4 | 0.000157 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 77 | 77 | AY.103 | 0.000478 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 49 | 49 | AN.1 | 0.98 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 34 | 34 | B.1.1 | 0.000617 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 30 | 30 | AY.25 | 0.00018 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 21 | 21 | B.1 | 0.000192 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 14 | 14 | B.1.36.18 | 0.005882 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 12 | 12 | P.1 | 0.000189 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 11 | 11 | AY.43 | 0.000049 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 11 | 11 | B.1.617.2 | 0.000041 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 10 | 10 | AY.44 | 0.000061 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 10 | 10 | B.1.160 | 0.000312 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 10 | 10 | B.1.2 | 0.000088 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 8 | 8 | B.1.1.519 | 0.000318 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 7 | 7 | AY.4.5 | 0.000752 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 7 | 7 | B.1.1.17 | 0.116667 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 6 | 6 | B.1.1.374 | 0.014252 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 5 | 5 | AY.5.3 | 0.001687 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 5 | 5 | B.1.1.318 | 0.001509 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 5 | 5 | B.1.1.37 | 0.000964 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 5 | 5 | B.1.221 | 0.000355 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 5 | 5 | B.1.234 | 0.00066 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 5 | 5 | B.1.36.38 | 0.00821 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 4 | 4 | AY.4.2.1 | 0.000596 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 3 | 3 | A.5 | 0.005769 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 3 | 3 | AY.7 | 0.000588 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 3 | 3 | B.1.1.194 | 0.014851 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | A | 0.000774 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | AY.120.2 | 0.002571 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | B.1.206 | 0.001631 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | B.1.237 | 0.00995 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | B.1.520 | 0.043478 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.1.200 | 0.007463 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.1.335 | 0.012987 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.173 | 0.026316 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | Q.1 | 0.000126 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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