CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 24 | L24F | L204F | nonsyn | Ctt | Ttt | 3424 | 3424 | 1 | 875-877 |
Details of the mutation L24F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 3424 | 3424 | All | 0.000655 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 549 | 549 | AY.4 | 0.000854 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 396 | 396 | B.1.480 | 0.985075 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 368 | 368 | B.1.1.7 | 0.000329 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 185 | 185 | AY.47 | 0.005754 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 170 | 170 | AY.44 | 0.001035 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 124 | 124 | B.1.617.2 | 0.000467 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 110 | 110 | AY.25 | 0.000662 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 110 | 110 | B.1.243 | 0.007654 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 99 | 99 | AY.103 | 0.000615 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 90 | 90 | B.1 | 0.000824 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 82 | 82 | B.1.2 | 0.000722 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 77 | 77 | B.1.398 | 0.229167 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 70 | 70 | P.1 | 0.001103 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 59 | 59 | AY.43 | 0.000261 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 46 | 46 | AY.3 | 0.000458 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 46 | 46 | B.1.634 | 0.157534 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 41 | 41 | AY.5 | 0.000847 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 36 | 36 | B.1.1.306 | 0.015783 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 35 | 35 | B.1.1.316 | 0.032377 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 34 | 34 | B.1.177 | 0.000448 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 29 | 29 | AY.9.2 | 0.001065 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 28 | 28 | B.1.1 | 0.000508 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 26 | 26 | B.1.234 | 0.003431 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 25 | 25 | B.1.351 | 0.000743 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 25 | 25 | B.1.526 | 0.000588 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 22 | 22 | B.1.1.519 | 0.000874 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 22 | 22 | R.1 | 0.00198 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 21 | 21 | AY.102 | 0.000557 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 18 | 18 | AY.29 | 0.000284 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 17 | 17 | AY.26 | 0.000481 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 15 | 15 | AY.36 | 0.002223 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 15 | 15 | AY.39 | 0.000371 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 15 | 15 | Q.1 | 0.001895 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 14 | 14 | AY.4.2 | 0.000304 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 13 | 13 | AY.34 | 0.001261 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 12 | 12 | AY.74 | 0.001388 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 11 | 11 | AY.20 | 0.000428 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 11 | 11 | B.1.160 | 0.000343 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 11 | 11 | B.1.258 | 0.000732 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 11 | 11 | P.1.15 | 0.002556 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 10 | 10 | B | 0.001278 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 8 | 8 | AY.33 | 0.000534 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 8 | 8 | B.1.1.176 | 0.003515 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 8 | 8 | B.1.429 | 0.000188 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 7 | 7 | AY.120 | 0.00026 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 7 | 7 | AY.121 | 0.000947 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 7 | 7 | AY.95 | 0.005327 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 7 | 7 | B.1.1.1 | 0.002287 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 7 | 7 | B.1.1.189 | 0.01059 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 7 | 7 | C.37 | 0.000812 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 6 | 6 | AY.100 | 0.000276 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 6 | 6 | AY.45 | 0.00073 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 6 | 6 | B.1.1.318 | 0.001811 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 6 | 6 | B.1.301 | 0.035503 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 6 | 6 | B.1.8 | 0.011834 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 6 | 6 | P.2 | 0.00112 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 5 | 5 | B.1.1.214 | 0.000277 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 5 | 5 | B.1.1.28 | 0.001556 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 5 | 5 | B.1.131 | 0.04386 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 5 | 5 | B.1.258.17 | 0.00052 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 5 | 5 | B.1.499 | 0.005252 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 5 | 5 | B.1.525 | 0.000566 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 4 | 4 | AY.23 | 0.000279 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 4 | 4 | AY.30 | 0.001583 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 4 | 4 | AY.7 | 0.000784 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 4 | 4 | AY.91 | 0.002922 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 3 | 3 | AY.24 | 0.001293 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 3 | 3 | AY.40 | 0.002893 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 3 | 3 | AY.46.2 | 0.001906 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 3 | 3 | B.1.1.351 | 0.00838 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 3 | 3 | B.1.1.461 | 0.036145 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 3 | 3 | B.1.236 | 0.00616 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 3 | 3 | B.1.628 | 0.001057 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 3 | 3 | B.1.637 | 0.000219 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 2 | 2 | AY.50 | 0.001599 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 2 | 2 | B.1.1.265 | 0.006309 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 2 | 2 | B.1.1.291 | 0.001485 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 2 | 2 | B.1.420 | 0.020833 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 2 | 2 | B.1.470 | 0.002809 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 2 | 2 | B.1.538 | 0.016129 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 2 | 2 | B.1.617.3 | 0.00597 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 2 | 2 | B.6 | 0.00182 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 2 | 2 | P.1.16 | 0.000748 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.1.376 | 0.005952 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.162 | 0.005025 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.195 | 0.005025 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.224 | 0.025 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.473 | 0.019231 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.495 | 0.009091 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp2 | 24 | L24F | Ctt | Ttt | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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