CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = L140F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2140L140FL320FnonsynCtcTtc125212500.9984031223-1225
ORF1ab/nsp2140L140FL320FnonsynCtCTtT125220.001597441223-1225

Details of the mutation L140F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2140L140FCtcTtc12501252All0.000239
ORF1ab/nsp2140L140FCtCTtT21252All0
ORF1ab/nsp2140L140FCtcTtc453453B.1.1.70.000406
ORF1ab/nsp2140L140FCtcTtc319319B.1.258.220.850667
ORF1ab/nsp2140L140FCtcTtc6668AY.40.000103
ORF1ab/nsp2140L140FCtCTtT268AY.40.000003
ORF1ab/nsp2140L140FCtcTtc5050B.1.4290.001176
ORF1ab/nsp2140L140FCtcTtc2323B.1.617.20.000087
ORF1ab/nsp2140L140FCtcTtc1717AY.1030.000106
ORF1ab/nsp2140L140FCtcTtc1717AY.30.000169
ORF1ab/nsp2140L140FCtcTtc1616AY.470.000498
ORF1ab/nsp2140L140FCtcTtc1515AY.250.00009
ORF1ab/nsp2140L140FCtcTtc1313B.10.000119
ORF1ab/nsp2140L140FCtcTtc1313B.1.20.000114
ORF1ab/nsp2140L140FCtcTtc1212B.1.5920.48
ORF1ab/nsp2140L140FCtcTtc1111AY.1020.000292
ORF1ab/nsp2140L140FCtcTtc1111AY.430.000049
ORF1ab/nsp2140L140FCtcTtc1111B.1.177.540.006671
ORF1ab/nsp2140L140FCtcTtc1111B.1.5960.000959
ORF1ab/nsp2140L140FCtcTtc1010B.1.10.000181
ORF1ab/nsp2140L140FCtcTtc99AY.1190.000318
ORF1ab/nsp2140L140FCtcTtc99AY.270.000582
ORF1ab/nsp2140L140FCtcTtc99AY.440.000055
ORF1ab/nsp2140L140FCtcTtc88B.1.36.260.022857
ORF1ab/nsp2140L140FCtcTtc77B.1.5260.000165
ORF1ab/nsp2140L140FCtcTtc77P.10.00011
ORF1ab/nsp2140L140FCtcTtc55AY.1080.005513
ORF1ab/nsp2140L140FCtcTtc55B.1.1.3740.011876
ORF1ab/nsp2140L140FCtcTtc55B.1.1.3980.016129
ORF1ab/nsp2140L140FCtcTtc55B.1.1770.000066
ORF1ab/nsp2140L140FCtcTtc55B.1.360.00073
ORF1ab/nsp2140L140FCtcTtc55P.1.100.001347
ORF1ab/nsp2140L140FCtcTtc44AY.260.000113
ORF1ab/nsp2140L140FCtcTtc44AY.46.60.000289
ORF1ab/nsp2140L140FCtcTtc44B.1.2580.000266
ORF1ab/nsp2140L140FCtcTtc44B.1.3510.000119
ORF1ab/nsp2140L140FCtcTtc44Q.10.000505
ORF1ab/nsp2140L140FCtcTtc33AY.290.000047
ORF1ab/nsp2140L140FCtcTtc33AY.390.000074
ORF1ab/nsp2140L140FCtcTtc33AY.690.00056
ORF1ab/nsp2140L140FCtcTtc33B.1.1.3540.013158
ORF1ab/nsp2140L140FCtcTtc33B.1.36.170.001482
ORF1ab/nsp2140L140FCtcTtc33P.1.140.000143
ORF1ab/nsp2140L140FCtcTtc22AY.1160.000574
ORF1ab/nsp2140L140FCtcTtc22AY.340.000194
ORF1ab/nsp2140L140FCtcTtc22AY.4.20.000043
ORF1ab/nsp2140L140FCtcTtc22AY.60.000082
ORF1ab/nsp2140L140FCtcTtc22AY.980.000158
ORF1ab/nsp2140L140FCtcTtc22B.1.1.280.000622
ORF1ab/nsp2140L140FCtcTtc22B.1.1600.000062
ORF1ab/nsp2140L140FCtcTtc22B.1.2210.000142
ORF1ab/nsp2140L140FCtcTtc22B.1.2340.000264
ORF1ab/nsp2140L140FCtcTtc22B.1.2930.025
ORF1ab/nsp2140L140FCtcTtc22P.1.120.000968
ORF1ab/nsp2140L140FCtcTtc22P.1.70.000639
ORF1ab/nsp2140L140FCtcTtc110.055556
ORF1ab/nsp2140L140FCtcTtc11A.20.000662
ORF1ab/nsp2140L140FCtcTtc11A.23.10.000704
ORF1ab/nsp2140L140FCtcTtc11AY.1000.000046
ORF1ab/nsp2140L140FCtcTtc11AY.1010.00049
ORF1ab/nsp2140L140FCtcTtc11AY.1130.000142
ORF1ab/nsp2140L140FCtcTtc11AY.116.10.000311
ORF1ab/nsp2140L140FCtcTtc11AY.200.000039
ORF1ab/nsp2140L140FCtcTtc11AY.3.10.000085
ORF1ab/nsp2140L140FCtcTtc11AY.330.000067
ORF1ab/nsp2140L140FCtcTtc11AY.4.2.10.000149
ORF1ab/nsp2140L140FCtcTtc11AY.400.000964
ORF1ab/nsp2140L140FCtcTtc11AY.450.000122
ORF1ab/nsp2140L140FCtcTtc11AY.46.50.000198
ORF1ab/nsp2140L140FCtcTtc11AY.50.000021
ORF1ab/nsp2140L140FCtcTtc11AY.540.000095
ORF1ab/nsp2140L140FCtcTtc11AY.570.000656
ORF1ab/nsp2140L140FCtcTtc11AY.700.000209
ORF1ab/nsp2140L140FCtcTtc11AY.740.000116
ORF1ab/nsp2140L140FCtcTtc11AY.750.000056
ORF1ab/nsp2140L140FCtcTtc11AY.75.10.00018
ORF1ab/nsp2140L140FCtcTtc11AY.90.000068
ORF1ab/nsp2140L140FCtcTtc11B.1.1.100.001115
ORF1ab/nsp2140L140FCtcTtc11B.1.1.2430.004082
ORF1ab/nsp2140L140FCtcTtc11B.1.1.3180.000302
ORF1ab/nsp2140L140FCtcTtc11B.1.1.3760.005952
ORF1ab/nsp2140L140FCtcTtc11B.1.1.4090.002833
ORF1ab/nsp2140L140FCtcTtc11B.1.1.630.000386
ORF1ab/nsp2140L140FCtcTtc11B.1.160.270.015152
ORF1ab/nsp2140L140FCtcTtc11B.1.177.860.000183
ORF1ab/nsp2140L140FCtcTtc11B.1.2410.000812
ORF1ab/nsp2140L140FCtcTtc11B.1.36.290.000517
ORF1ab/nsp2140L140FCtcTtc11B.1.36.80.001
ORF1ab/nsp2140L140FCtcTtc11B.1.4000.000429
ORF1ab/nsp2140L140FCtcTtc11B.1.466.20.000391
ORF1ab/nsp2140L140FCtcTtc11B.1.5870.001898
ORF1ab/nsp2140L140FCtcTtc11B.1.5950.000261
ORF1ab/nsp2140L140FCtcTtc11B.1.6230.000536
ORF1ab/nsp2140L140FCtcTtc11B.1.930.000934
ORF1ab/nsp2140L140FCtcTtc11C.36.30.000567
ORF1ab/nsp2140L140FCtcTtc11C.370.000116