CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 489 | K489N | K669N | nonsyn | aaG | aaT | 8475 | 6633 | 0.782655 | 2270-2272 |
ORF1ab/nsp2 | 489 | K489N | K669N | nonsyn | aaG | aaC | 8475 | 1842 | 0.217345 | 2270-2272 |
Details of the mutation K489N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 6633 | 8475 | All | 0.001269 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 1842 | 8475 | All | 0.000352 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 2749 | 2750 | AY.41 | 0.808054 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 1 | 2750 | AY.41 | 0.000294 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 1638 | 1638 | AY.1 | 0.648199 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 972 | 1013 | B.1.617.2 | 0.00366 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 41 | 1013 | B.1.617.2 | 0.000154 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 583 | 592 | B.1.1.7 | 0.000522 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 9 | 592 | B.1.1.7 | 0.000008 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 538 | 538 | AY.111 | 0.098535 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 377 | 379 | AY.43 | 0.00167 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 2 | 379 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 200 | 205 | AY.25 | 0.001203 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 5 | 205 | AY.25 | 0.00003 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 171 | 173 | AY.102 | 0.004534 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 2 | 173 | AY.102 | 0.000053 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 119 | 120 | AY.44 | 0.000724 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 1 | 120 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 98 | 100 | AY.4 | 0.000153 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 2 | 100 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 90 | 92 | AY.103 | 0.000559 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 2 | 92 | AY.103 | 0.000012 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 68 | 68 | B.1.177 | 0.000895 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 56 | 56 | B.1.1.176 | 0.024605 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 52 | 52 | B.1.258 | 0.00346 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 34 | 39 | AY.117 | 0.002874 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 5 | 39 | AY.117 | 0.000423 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 37 | 37 | AY.69 | 0.006907 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 24 | 32 | AY.39 | 0.000593 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 8 | 32 | AY.39 | 0.000198 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 24 | 25 | AY.84 | 0.010499 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 1 | 25 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 25 | 25 | P.1 | 0.000394 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 23 | 23 | B.1.2 | 0.000203 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 20 | 21 | B.1 | 0.000183 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 1 | 21 | B.1 | 0.000009 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 14 | 18 | AY.46 | 0.001457 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 4 | 18 | AY.46 | 0.000416 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 10 | 16 | AY.33 | 0.000668 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 6 | 16 | AY.33 | 0.000401 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 16 | 16 | P.1.14 | 0.000765 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 13 | 13 | AY.6 | 0.000535 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 13 | 13 | B.1.1.519 | 0.000516 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 13 | 13 | B.1.241 | 0.010552 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 12 | 12 | AY.20 | 0.000466 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 10 | 11 | AY.5 | 0.000206 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 1 | 11 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 11 | 11 | Q.1 | 0.00139 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 8 | 10 | AY.92 | 0.002298 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 2 | 10 | AY.92 | 0.000575 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 10 | 10 | AY.98.1 | 0.000484 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 10 | 10 | B.1.258.12 | 0.07874 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 9 | 9 | AY.34 | 0.000873 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 9 | 9 | AY.83 | 0.015517 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 9 | 9 | AY.88 | 0.007958 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 8 | 9 | D.2 | 0.0006 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 1 | 9 | D.2 | 0.000075 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 9 | 9 | R.1 | 0.00081 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 4 | 8 | AY.118 | 0.000251 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 4 | 8 | AY.118 | 0.000251 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 8 | 8 | B.1.617.3 | 0.023881 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 7 | 7 | AY.100 | 0.000322 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 7 | 7 | AY.3 | 0.00007 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 7 | 7 | AY.5.4 | 0.001937 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 7 | 7 | Q.8 | 0.001154 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 6 | 6 | AY.119 | 0.000212 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 5 | 6 | AY.23 | 0.000349 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 1 | 6 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 4 | 6 | AY.45 | 0.000487 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 2 | 6 | AY.45 | 0.000243 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 6 | 6 | B.1.36 | 0.000875 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 5 | 5 | A.2.5 | 0.002495 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 5 | 5 | AY.38 | 0.002496 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 5 | 5 | AY.46.1 | 0.005133 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 4 | 5 | AY.62 | 0.001743 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 5 | AY.62 | 0.000436 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 3 | 5 | AY.75 | 0.000168 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 2 | 5 | AY.75 | 0.000112 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 3 | 5 | B.1.526 | 0.000071 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 2 | 5 | B.1.526 | 0.000047 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 3 | 4 | AY.113 | 0.000427 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 1 | 4 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 4 | 4 | AY.116 | 0.001147 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 3 | 4 | AY.12 | 0.000948 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 1 | 4 | AY.12 | 0.000316 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 3 | 4 | AY.120 | 0.000112 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 1 | 4 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 2 | 4 | AY.26 | 0.000057 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 2 | 4 | AY.26 | 0.000057 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 3 | 4 | AY.34.1 | 0.00153 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 1 | 4 | AY.34.1 | 0.00051 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 3 | 4 | AY.5.3 | 0.001012 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 1 | 4 | AY.5.3 | 0.000337 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 3 | 4 | AY.54 | 0.000286 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 1 | 4 | AY.54 | 0.000095 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 3 | 4 | AY.67 | 0.001393 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 1 | 4 | AY.67 | 0.000464 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 4 | 4 | AY.74 | 0.000463 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 4 | 4 | AY.77 | 0.00451 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 4 | 4 | AY.89 | 0.019608 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 3 | 3 | B.1.1.311 | 0.001074 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 3 | 3 | B.1.36.18 | 0.001261 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 3 | 3 | B.1.367 | 0.002377 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 3 | 3 | B.1.409 | 0.002344 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 3 | 3 | B.1.570 | 0.008824 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 3 | 3 | C.2 | 0.048387 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 2 | 2 | AY.120.2 | 0.002571 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 2 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 1 | 2 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 1 | 2 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 2 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 1 | 2 | AY.73 | 0.000665 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 2 | AY.73 | 0.000665 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 2 | 2 | B.1.1.375 | 0.02381 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 2 | 2 | B.1.565 | 0.001621 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 1 | 1 | AY.22 | 0.002092 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 1 | B.1.1.255 | 0.00303 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 1 | B.1.1.352 | 0.03125 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaC | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp2 | 489 | K489N | aaG | aaT | 1 | 1 | C.6 | 0.037037 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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