CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 489 | K489K | K669K | syn | aaG | aaA | 2075 | 2075 | 1 | 2270-2272 |
Details of the mutation K489K within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 2075 | 2075 | All | 0.000397 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1057 | 1057 | AY.4 | 0.001645 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 230 | 230 | A.2.5 | 0.11477 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 210 | 210 | B.1.1.7 | 0.000188 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 93 | 93 | A.2.5.3 | 0.958763 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 60 | 60 | AY.110 | 0.006761 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 50 | 50 | B.1.160 | 0.001559 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 38 | 38 | AY.43 | 0.000168 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 37 | 37 | AY.25 | 0.000223 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 21 | 21 | B.1.617.2 | 0.000079 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 20 | 20 | B.1.619 | 0.017422 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 18 | 18 | B.1.2 | 0.000158 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 16 | 16 | AY.44 | 0.000097 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 15 | 15 | AY.47 | 0.000467 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 14 | 14 | B.1.429 | 0.000329 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 9 | 9 | AY.42 | 0.000362 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 7 | 7 | AY.98 | 0.000553 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 7 | 7 | B.1.36 | 0.001021 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 6 | 6 | AY.120 | 0.000223 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 5 | 5 | AY.100 | 0.00023 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 4 | 4 | AY.106 | 0.00134 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 4 | 4 | B.1.1.226 | 0.023256 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 4 | 4 | B.1.318 | 0.153846 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 4 | 4 | P.1.15 | 0.000929 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 2 | 2 | A.28 | 0.005291 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 2 | 2 | AY.120.2 | 0.002571 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 2 | 2 | B.1.210 | 0.004264 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | B.1.1.385 | 0.004464 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | B.1.293 | 0.0125 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 489 | K489K | aaG | aaA | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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