CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = I560V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2560I560VI740VnonsynAtcGtc3543490.9858762483-2485
ORF1ab/nsp2560I560VI740VnonsynAtCGtT35430.008474582483-2485
ORF1ab/nsp2560I560VI740VnonsynAtCGtA35420.005649722483-2485

Details of the mutation I560V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2560I560VAtcGtc349354All0.000067
ORF1ab/nsp2560I560VAtCGtT3354All0.000001
ORF1ab/nsp2560I560VAtCGtA2354All0
ORF1ab/nsp2560I560VAtcGtc4646AY.40.000072
ORF1ab/nsp2560I560VAtcGtc4545B.1.1.70.00004
ORF1ab/nsp2560I560VAtcGtc3838AY.1030.000236
ORF1ab/nsp2560I560VAtcGtc3232AY.440.000195
ORF1ab/nsp2560I560VAtcGtc1515B.1.4290.000353
ORF1ab/nsp2560I560VAtcGtc1314B.10.000119
ORF1ab/nsp2560I560VAtCGtT114B.10.000009
ORF1ab/nsp2560I560VAtcGtc1313AY.250.000078
ORF1ab/nsp2560I560VAtcGtc1212AY.39.10.000475
ORF1ab/nsp2560I560VAtcGtc1212B.1.617.20.000045
ORF1ab/nsp2560I560VAtcGtc1010AY.290.000158
ORF1ab/nsp2560I560VAtcGtc77AY.430.000031
ORF1ab/nsp2560I560VAtcGtc66AY.30.00006
ORF1ab/nsp2560I560VAtcGtc55AY.200.000194
ORF1ab/nsp2560I560VAtcGtc55B.1.20.000044
ORF1ab/nsp2560I560VAtCGtA240.111111
ORF1ab/nsp2560I560VAtcGtc240.111111
ORF1ab/nsp2560I560VAtcGtc44AY.1020.000106
ORF1ab/nsp2560I560VAtcGtc44AY.470.000124
ORF1ab/nsp2560I560VAtcGtc44AY.99.20.000369
ORF1ab/nsp2560I560VAtcGtc44B.1.4270.000202
ORF1ab/nsp2560I560VAtcGtc44B.1.5950.001044
ORF1ab/nsp2560I560VAtcGtc33B.1.10.000054
ORF1ab/nsp2560I560VAtcGtc33B.1.2340.000396
ORF1ab/nsp2560I560VAtcGtc33B.1.2910.057692
ORF1ab/nsp2560I560VAtcGtc33P.10.000047
ORF1ab/nsp2560I560VAtcGtc22AY.1190.000071
ORF1ab/nsp2560I560VAtcGtc22AY.260.000057
ORF1ab/nsp2560I560VAtcGtc22AY.390.000049
ORF1ab/nsp2560I560VAtcGtc22AY.4.50.000215
ORF1ab/nsp2560I560VAtCGtT22AY.60.000082
ORF1ab/nsp2560I560VAtcGtc22AY.750.000112
ORF1ab/nsp2560I560VAtcGtc22B.1.1.370.000386
ORF1ab/nsp2560I560VAtcGtc22B.1.2060.001631
ORF1ab/nsp2560I560VAtcGtc22B.1.360.000292
ORF1ab/nsp2560I560VAtcGtc22B.1.4060.012121
ORF1ab/nsp2560I560VAtcGtc22B.1.4970.00063
ORF1ab/nsp2560I560VAtcGtc22B.1.617.10.000258
ORF1ab/nsp2560I560VAtcGtc22B.1.6370.000146
ORF1ab/nsp2560I560VAtcGtc22Q.80.00033
ORF1ab/nsp2560I560VAtcGtc22R.10.00018
ORF1ab/nsp2560I560VAtcGtc11A.180.05
ORF1ab/nsp2560I560VAtcGtc11AV.10.005051
ORF1ab/nsp2560I560VAtcGtc11AY.1090.00074
ORF1ab/nsp2560I560VAtcGtc11AY.1200.000037
ORF1ab/nsp2560I560VAtcGtc11AY.240.000431
ORF1ab/nsp2560I560VAtcGtc11AY.360.000148
ORF1ab/nsp2560I560VAtcGtc11AY.420.00004
ORF1ab/nsp2560I560VAtcGtc11AY.46.60.000072
ORF1ab/nsp2560I560VAtcGtc11AY.50.000021
ORF1ab/nsp2560I560VAtcGtc11AY.510.000909
ORF1ab/nsp2560I560VAtcGtc11AY.550.000917
ORF1ab/nsp2560I560VAtcGtc11AY.610.000105
ORF1ab/nsp2560I560VAtcGtc11AY.9.20.000037
ORF1ab/nsp2560I560VAtcGtc11AY.98.10.000048
ORF1ab/nsp2560I560VAtcGtc11B.1.1.1740.003378
ORF1ab/nsp2560I560VAtcGtc11B.1.1.540.003021
ORF1ab/nsp2560I560VAtcGtc11B.1.177.570.000281
ORF1ab/nsp2560I560VAtcGtc11B.1.220.001318
ORF1ab/nsp2560I560VAtcGtc11B.1.2790.000514
ORF1ab/nsp2560I560VAtcGtc11B.1.3510.00003
ORF1ab/nsp2560I560VAtcGtc11B.1.351.50.0006
ORF1ab/nsp2560I560VAtcGtc11B.1.36.180.00042
ORF1ab/nsp2560I560VAtcGtc11B.1.36.290.000517
ORF1ab/nsp2560I560VAtcGtc11B.1.4590.004082
ORF1ab/nsp2560I560VAtcGtc11B.1.5960.000087
ORF1ab/nsp2560I560VAtcGtc11B.1.5970.00463
ORF1ab/nsp2560I560VAtcGtc11B.1.6090.000479
ORF1ab/nsp2560I560VAtcGtc11P.1.140.000048