CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = I559T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2559I559TI739TnonsynaTtaCt19180.9473682480-2482
ORF1ab/nsp2559I559TI739TnonsynaTTaCC1910.05263162480-2482

Details of the mutation I559T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2559I559TaTtaCt1819All0.000003
ORF1ab/nsp2559I559TaTTaCC119All0
ORF1ab/nsp2559I559TaTtaCt220.111111
ORF1ab/nsp2559I559TaTtaCt22AY.430.000009
ORF1ab/nsp2559I559TaTtaCt22AY.50.000041
ORF1ab/nsp2559I559TaTtaCt22B.1.177.160.001329
ORF1ab/nsp2559I559TaTtaCt11AY.100.00053
ORF1ab/nsp2559I559TaTTaCC11AY.1030.000006
ORF1ab/nsp2559I559TaTtaCt11AY.1160.000287
ORF1ab/nsp2559I559TaTtaCt11AY.1200.000037
ORF1ab/nsp2559I559TaTtaCt11AY.99.20.000092
ORF1ab/nsp2559I559TaTtaCt11B.10.000009
ORF1ab/nsp2559I559TaTtaCt11B.1.1.70.000001
ORF1ab/nsp2559I559TaTtaCt11B.1.2210.000071
ORF1ab/nsp2559I559TaTtaCt11B.1.3670.000792
ORF1ab/nsp2559I559TaTtaCt11B.1.564.10.001577
ORF1ab/nsp2559I559TaTtaCt11B.1.617.20.000004