CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 251 | I251M | I431M | nonsyn | atA | atG | 4138 | 4138 | 1 | 1556-1558 |
Details of the mutation I251M within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 4138 | 4138 | All | 0.000791 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1252 | 1252 | B.1.617.2 | 0.004714 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 590 | 590 | AY.40 | 0.568949 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 323 | 323 | AY.4 | 0.000503 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 287 | 287 | B.1.177 | 0.003779 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 275 | 275 | B.1.1.7 | 0.000246 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 256 | 256 | AY.46 | 0.026644 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 88 | 88 | B.1.1.222 | 0.017952 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 68 | 68 | B.1.177.4 | 0.014352 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 59 | 59 | B.1.1 | 0.00107 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 55 | 55 | B.1.438 | 0.359477 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 53 | 53 | AY.62 | 0.023094 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 48 | 48 | AY.60 | 0.045028 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 47 | 47 | B.1 | 0.00043 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 46 | 46 | AY.29 | 0.000726 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 33 | 33 | P.1.15 | 0.007667 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 32 | 32 | P.1 | 0.000504 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 29 | 29 | B.1.1.33 | 0.012205 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 29 | 29 | B.1.1.435 | 1 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 29 | 29 | P.2 | 0.005412 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 25 | 25 | B.1.2 | 0.00022 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 24 | 24 | AY.16.1 | 0.011278 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 22 | 22 | B.1.241 | 0.017857 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 21 | 21 | AY.59 | 0.011123 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 19 | 19 | B.1.177.34 | 1 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 17 | 17 | AY.103 | 0.000106 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 16 | 16 | AY.5.2 | 0.039409 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 15 | 15 | B.1.1.348 | 0.011943 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 13 | 13 | AY.26 | 0.000368 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 13 | 13 | AY.3 | 0.000129 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 13 | 13 | C.37 | 0.001509 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 12 | 12 | AY.39 | 0.000297 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 12 | 12 | B.1.427 | 0.000606 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 11 | 11 | AY.25 | 0.000066 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 10 | 10 | AY.44 | 0.000061 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 9 | 9 | AY.102 | 0.000239 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 9 | 9 | AY.47 | 0.00028 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 9 | 9 | B.1.258 | 0.000599 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 8 | 8 | AY.61 | 0.000838 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 7 | 7 | AY.54 | 0.000667 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 7 | 7 | AY.86 | 0.005809 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 7 | 7 | B.1.258.17 | 0.000728 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 7 | 7 | B.6.8 | 0.057851 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 6 | 6 | AY.75 | 0.000336 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 6 | 6 | B.1.1.284 | 0.000644 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 5 | 5 | AY.65 | 0.002665 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 5 | 5 | B.1.1.214 | 0.000277 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 4 | 4 | AY.27 | 0.000259 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 4 | 4 | B.1.1.232 | 0.00726 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 4 | 4 | B.1.1.318 | 0.001207 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 4 | 4 | B.1.1.388 | 0.181818 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 4 | 4 | B.1.1.434 | 0.001394 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 4 | 4 | B.1.1.70 | 0.001364 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 3 | 3 | AY.4.4 | 0.001227 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 3 | 3 | AY.99 | 0.003148 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 3 | 3 | B.1.1.326 | 0.005282 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 3 | 3 | B.1.1.432 | 0.003797 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 3 | 3 | B.1.1.53 | 0.041096 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 3 | 3 | B.1.177.82 | 0.001432 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | A.27 | 0.003311 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | B.1.1.398 | 0.006452 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | B.1.111 | 0.00235 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | B.1.177.3 | 0.015267 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | B.1.377 | 0.009132 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | B.1.459 | 0.008163 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | B.1.470 | 0.002809 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | B.1.78 | 0.017094 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | B.6 | 0.00182 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.1.400 | 0.05 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.1.414 | 0.142857 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.160.15 | 0.00495 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.219 | 0.009434 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.36.28 | 0.005747 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.633 | 0.041667 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | C.30.1 | 0.006711 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | W.3 | 0.005263 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|