CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = H237Y

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2237H237YH417YnonsynCatTat653265300.9996941514-1516
ORF1ab/nsp2237H237YH417YnonsynCaTTaC653220.0003061851514-1516

Details of the mutation H237Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2237H237YCatTat65306532All0.001249
ORF1ab/nsp2237H237YCaTTaC26532All0
ORF1ab/nsp2237H237YCatTat10201020AY.460.106162
ORF1ab/nsp2237H237YCatTat832832B.1.1.70.000745
ORF1ab/nsp2237H237YCatTat663663B.1.617.20.002496
ORF1ab/nsp2237H237YCatTat516516AY.40.000803
ORF1ab/nsp2237H237YCatTat339339AY.250.002039
ORF1ab/nsp2237H237YCatTat283283R.10.025473
ORF1ab/nsp2237H237YCatTat190190B.1.20.001673
ORF1ab/nsp2237H237YCatTat142142B.1.10.002576
ORF1ab/nsp2237H237YCatTat119119B.1.1600.003711
ORF1ab/nsp2237H237YCatTat118118B.1.1.3180.035607
ORF1ab/nsp2237H237YCatTat113113B.1.160.100.91129
ORF1ab/nsp2237H237YCatTat110110AY.430.000487
ORF1ab/nsp2237H237YCatTat109109AY.30.001084
ORF1ab/nsp2237H237YCatTat105105B.1.3571
ORF1ab/nsp2237H237YCatTat9696B.10.000879
ORF1ab/nsp2237H237YCatTat8989AY.1030.000553
ORF1ab/nsp2237H237YCatTat8989B.1.5490.640288
ORF1ab/nsp2237H237YCatTat8888AY.390.002175
ORF1ab/nsp2237H237YCatTat6363B.1.5260.001481
ORF1ab/nsp2237H237YCatTat5757AY.260.001614
ORF1ab/nsp2237H237YCatTat5353P.10.000835
ORF1ab/nsp2237H237YCatTat4848AY.440.000292
ORF1ab/nsp2237H237YCatTat4747B.1.1.4060.305195
ORF1ab/nsp2237H237YCatTat4747B.1.177.160.031229
ORF1ab/nsp2237H237YCatTat3939AY.200.001516
ORF1ab/nsp2237H237YCatTat3939B.1.1770.000514
ORF1ab/nsp2237H237YCatTat3838B.1.3510.00113
ORF1ab/nsp2237H237YCatTat3535B.1.4260.035318
ORF1ab/nsp2237H237YCatTat3434B.1.1.280.010582
ORF1ab/nsp2237H237YCatTat3131AY.1190.001095
ORF1ab/nsp2237H237YCatTat3030AY.470.000933
ORF1ab/nsp2237H237YCatTat3030AY.90.002028
ORF1ab/nsp2237H237YCatTat2828B.1.177.350.01935
ORF1ab/nsp2237H237YCatTat2727AY.99.20.002488
ORF1ab/nsp2237H237YCatTat2222AY.50.000454
ORF1ab/nsp2237H237YCatTat2020AY.1180.001253
ORF1ab/nsp2237H237YCatTat2020B.1.1.2140.001109
ORF1ab/nsp2237H237YCatTat1919B.1.1.3770.026243
ORF1ab/nsp2237H237YCatTat1818B.1.2430.001253
ORF1ab/nsp2237H237YCatTat1717B.1.177.240.022021
ORF1ab/nsp2237H237YCatTat1717B.1.3240.027287
ORF1ab/nsp2237H237YCatTat1717B.1.438.10.001823
ORF1ab/nsp2237H237YCatTat1616AY.5.40.004427
ORF1ab/nsp2237H237YCatTat1616B.1.3690.004564
ORF1ab/nsp2237H237YCatTat1515AY.330.001002
ORF1ab/nsp2237H237YCatTat1515B.1.4290.000353
ORF1ab/nsp2237H237YCatTat1414B.1.177.600.003058
ORF1ab/nsp2237H237YCatTat1414B.1.4040.018229
ORF1ab/nsp2237H237YCatTat1414B.1.5750.004248
ORF1ab/nsp2237H237YCatTat1313AY.1140.003004
ORF1ab/nsp2237H237YCatTat1313AY.98.10.00063
ORF1ab/nsp2237H237YCatTat1313B.1.2210.000923
ORF1ab/nsp2237H237YCatTat1313P.1.140.000621
ORF1ab/nsp2237H237YCatTat1212AY.46.60.000866
ORF1ab/nsp2237H237YCatTat1212B.1.1.2840.001289
ORF1ab/nsp2237H237YCatTat1212B.1.1.4320.01519
ORF1ab/nsp2237H237YCatTat1212B.1.177.520.02109
ORF1ab/nsp2237H237YCatTat1111AY.1130.001566
ORF1ab/nsp2237H237YCatTat1111B.1.1.5190.000437
ORF1ab/nsp2237H237YCatTat1111B.1.3990.021277
ORF1ab/nsp2237H237YCatTat1111C.370.001277
ORF1ab/nsp2237H237YCatTat1111P.1.160.004115
ORF1ab/nsp2237H237YCatTat1010AY.1170.000845
ORF1ab/nsp2237H237YCatTat1010B.1.1.2220.00204
ORF1ab/nsp2237H237YCatTat1010B.1.2340.001319
ORF1ab/nsp2237H237YCatTat99AY.230.000628
ORF1ab/nsp2237H237YCatTat99AY.290.000142
ORF1ab/nsp2237H237YCatTat99AY.680.002464
ORF1ab/nsp2237H237YCatTat88AY.1110.001465
ORF1ab/nsp2237H237YCatTat88B.1.2580.000532
ORF1ab/nsp2237H237YCatTat88B.1.5250.000905
ORF1ab/nsp2237H237YCatTat77AY.4.20.000152
ORF1ab/nsp2237H237YCatTat77AY.850.00299
ORF1ab/nsp2237H237YCatTat77B.1.1260.008929
ORF1ab/nsp2237H237YCatTat77B.1.5510.009032
ORF1ab/nsp2237H237YCatTat77B.40.015453
ORF1ab/nsp2237H237YCatTat66AY.46.50.00119
ORF1ab/nsp2237H237YCatTat66AY.9.20.00022
ORF1ab/nsp2237H237YCatTat66B.1.1.3110.002149
ORF1ab/nsp2237H237YCatTat66B.1.177.210.000459
ORF1ab/nsp2237H237YCatTat66B.1.4270.000303
ORF1ab/nsp2237H237YCatTat66Q.80.000989
ORF1ab/nsp2237H237YCatTat55AY.1000.00023
ORF1ab/nsp2237H237YCatTat55AY.120.20.006427
ORF1ab/nsp2237H237YCatTat55AY.420.000201
ORF1ab/nsp2237H237YCatTat55AY.450.000608
ORF1ab/nsp2237H237YCatTat55B.1.1.5250.027322
ORF1ab/nsp2237H237YCatTat55B.1.160.160.004647
ORF1ab/nsp2237H237YCatTat55B.1.466.20.001956
ORF1ab/nsp2237H237YCatTat55B.1.6210.000443
ORF1ab/nsp2237H237YCatTat55B.230.01462
ORF1ab/nsp2237H237YCatTat55B.400.001821
ORF1ab/nsp2237H237YCatTat240.111111
ORF1ab/nsp2237H237YCaTTaC240.111111
ORF1ab/nsp2237H237YCatTat44AY.1010.001962
ORF1ab/nsp2237H237YCatTat44AY.280.007561
ORF1ab/nsp2237H237YCatTat44AY.580.00363
ORF1ab/nsp2237H237YCatTat44AY.60.000165
ORF1ab/nsp2237H237YCatTat44AY.7.10.000451
ORF1ab/nsp2237H237YCatTat44B.1.1.3170.001647
ORF1ab/nsp2237H237YCatTat44B.1.1.4340.001394
ORF1ab/nsp2237H237YCatTat44B.1.1.500.002716
ORF1ab/nsp2237H237YCatTat44B.1.3890.004008
ORF1ab/nsp2237H237YCatTat44B.1.5090.003463
ORF1ab/nsp2237H237YCatTat44B.1.5960.000349
ORF1ab/nsp2237H237YCatTat44B.1.6280.001409
ORF1ab/nsp2237H237YCatTat44B.1.6370.000292
ORF1ab/nsp2237H237YCatTat44D.20.0003
ORF1ab/nsp2237H237YCatTat44P.1.150.000929
ORF1ab/nsp2237H237YCatTat44Q.40.001819
ORF1ab/nsp2237H237YCatTat33AY.1050.001929
ORF1ab/nsp2237H237YCatTat33AY.1200.000112
ORF1ab/nsp2237H237YCatTat33AY.120.10.000963
ORF1ab/nsp2237H237YCatTat33AY.46.20.001906
ORF1ab/nsp2237H237YCatTat33AY.520.002443
ORF1ab/nsp2237H237YCatTat33AY.540.000286
ORF1ab/nsp2237H237YCatTat33AY.75.10.000541
ORF1ab/nsp2237H237YCatTat33AY.800.003386
ORF1ab/nsp2237H237YCatTat33B.1.1.4660.026087
ORF1ab/nsp2237H237YCatTat33B.1.4970.000944
ORF1ab/nsp2237H237YCatTat22AY.1060.00067
ORF1ab/nsp2237H237YCatTat22AY.120.000632
ORF1ab/nsp2237H237YCatTat22AY.120.2.10.000997
ORF1ab/nsp2237H237YCatTat22AY.4.2.10.000298
ORF1ab/nsp2237H237YCatTat22AY.5.30.000675
ORF1ab/nsp2237H237YCatTat22AY.590.001059
ORF1ab/nsp2237H237YCatTat22AY.630.000774
ORF1ab/nsp2237H237YCatTat22AY.740.000231
ORF1ab/nsp2237H237YCatTat22AY.770.002255
ORF1ab/nsp2237H237YCatTat22AY.880.001768
ORF1ab/nsp2237H237YCatTat22AY.9.10.000167
ORF1ab/nsp2237H237YCatTat22AY.910.001461
ORF1ab/nsp2237H237YCatTat22B.1.1.1530.002191
ORF1ab/nsp2237H237YCatTat22B.1.1.2320.00363
ORF1ab/nsp2237H237YCatTat22B.1.1.250.001137
ORF1ab/nsp2237H237YCatTat22B.1.1.3940.04878
ORF1ab/nsp2237H237YCatTat22B.1.1.3980.006452
ORF1ab/nsp2237H237YCatTat22B.1.1.4130.013793
ORF1ab/nsp2237H237YCatTat22B.1.1.4200.002012
ORF1ab/nsp2237H237YCatTat22B.1.1.5210.010695
ORF1ab/nsp2237H237YCatTat22B.1.160.300.005952
ORF1ab/nsp2237H237YCatTat22B.1.177.500.00939
ORF1ab/nsp2237H237YCatTat22B.1.258.170.000208
ORF1ab/nsp2237H237YCatTat22B.1.2650.002541
ORF1ab/nsp2237H237YCatTat22B.1.3110.000549
ORF1ab/nsp2237H237YCatTat22B.1.360.000292
ORF1ab/nsp2237H237YCatTat22B.1.36.10.002281
ORF1ab/nsp2237H237YCatTat22B.1.5820.000981
ORF1ab/nsp2237H237YCatTat22B.1.617.10.000258
ORF1ab/nsp2237H237YCatTat22B.1.6200.001892
ORF1ab/nsp2237H237YCatTat22C.36.30.001134
ORF1ab/nsp2237H237YCatTat22N.50.003534
ORF1ab/nsp2237H237YCatTat22P.1.120.000968
ORF1ab/nsp2237H237YCatTat22P.20.000373
ORF1ab/nsp2237H237YCatTat11A0.000387
ORF1ab/nsp2237H237YCatTat11A.2.20.001689
ORF1ab/nsp2237H237YCatTat11A.23.10.000704
ORF1ab/nsp2237H237YCatTat11AD.20.000219
ORF1ab/nsp2237H237YCatTat11AT.10.005128
ORF1ab/nsp2237H237YCatTat11AY.1090.00074
ORF1ab/nsp2237H237YCatTat11AY.1210.000135
ORF1ab/nsp2237H237YCatTat11AY.130.000161
ORF1ab/nsp2237H237YCatTat11AY.140.000088
ORF1ab/nsp2237H237YCatTat11AY.170.008197
ORF1ab/nsp2237H237YCatTat11AY.190.00114
ORF1ab/nsp2237H237YCatTat11AY.240.000431
ORF1ab/nsp2237H237YCatTat11AY.3.10.000085
ORF1ab/nsp2237H237YCatTat11AY.340.000097
ORF1ab/nsp2237H237YCatTat11AY.360.000148
ORF1ab/nsp2237H237YCatTat11AY.39.10.00004
ORF1ab/nsp2237H237YCatTat11AY.39.1.10.000725
ORF1ab/nsp2237H237YCatTat11AY.4.10.000737
ORF1ab/nsp2237H237YCatTat11AY.400.000964
ORF1ab/nsp2237H237YCatTat11AY.410.000294
ORF1ab/nsp2237H237YCatTat11AY.46.10.001027
ORF1ab/nsp2237H237YCatTat11AY.530.000288
ORF1ab/nsp2237H237YCatTat11AY.610.000105
ORF1ab/nsp2237H237YCatTat11AY.670.000464
ORF1ab/nsp2237H237YCatTat11AY.690.000187
ORF1ab/nsp2237H237YCatTat11AY.750.000056
ORF1ab/nsp2237H237YCatTat11AY.930.000273
ORF1ab/nsp2237H237YCatTat11AY.970.001701
ORF1ab/nsp2237H237YCatTat11B0.000128
ORF1ab/nsp2237H237YCatTat11B.1.1.10.000327
ORF1ab/nsp2237H237YCatTat11B.1.1.1290.009174
ORF1ab/nsp2237H237YCatTat11B.1.1.1340.011364
ORF1ab/nsp2237H237YCatTat11B.1.1.1840.058824
ORF1ab/nsp2237H237YCatTat11B.1.1.1890.001513
ORF1ab/nsp2237H237YCatTat11B.1.1.2190.005
ORF1ab/nsp2237H237YCatTat11B.1.1.2280.003049
ORF1ab/nsp2237H237YCatTat11B.1.1.2290.005747
ORF1ab/nsp2237H237YCatTat11B.1.1.2360.006897
ORF1ab/nsp2237H237YCatTat11B.1.1.2540.011236
ORF1ab/nsp2237H237YCatTat11B.1.1.270.00565
ORF1ab/nsp2237H237YCatTat11B.1.1.2790.001121
ORF1ab/nsp2237H237YCatTat11B.1.1.2890.002083
ORF1ab/nsp2237H237YCatTat11B.1.1.2940.001266
ORF1ab/nsp2237H237YCatTat11B.1.1.3060.000438
ORF1ab/nsp2237H237YCatTat11B.1.1.310.066667
ORF1ab/nsp2237H237YCatTat11B.1.1.330.000421
ORF1ab/nsp2237H237YCatTat11B.1.1.3700.012658
ORF1ab/nsp2237H237YCatTat11B.1.1.3750.011905
ORF1ab/nsp2237H237YCatTat11B.1.1.3850.004464
ORF1ab/nsp2237H237YCatTat11B.1.1.700.000341
ORF1ab/nsp2237H237YCatTat11B.1.1430.021277
ORF1ab/nsp2237H237YCatTat11B.1.1570.002985
ORF1ab/nsp2237H237YCatTat11B.1.160.90.007194
ORF1ab/nsp2237H237YCatTat11B.1.177.40.000211
ORF1ab/nsp2237H237YCatTat11B.1.177.530.002392
ORF1ab/nsp2237H237YCatTat11B.1.177.70.000165
ORF1ab/nsp2237H237YCatTat11B.1.177.810.000189
ORF1ab/nsp2237H237YCatTat11B.1.177.860.000183
ORF1ab/nsp2237H237YCatTat11B.1.1990.004132
ORF1ab/nsp2237H237YCatTat11B.1.2320.000537
ORF1ab/nsp2237H237YCatTat11B.1.2410.000812
ORF1ab/nsp2237H237YCatTat11B.1.258.90.005
ORF1ab/nsp2237H237YCatTat11B.1.3360.002439
ORF1ab/nsp2237H237YCatTat11B.1.351.20.000303
ORF1ab/nsp2237H237YCatTat11B.1.351.30.000876
ORF1ab/nsp2237H237YCatTat11B.1.3610.001289
ORF1ab/nsp2237H237YCatTat11B.1.3710.001122
ORF1ab/nsp2237H237YCatTat11B.1.3800.006623
ORF1ab/nsp2237H237YCatTat11B.1.428.20.033333
ORF1ab/nsp2237H237YCatTat11B.1.4700.001404
ORF1ab/nsp2237H237YCatTat11B.1.5040.03125
ORF1ab/nsp2237H237YCatTat11B.1.5070.011236
ORF1ab/nsp2237H237YCatTat11B.1.5330.009615
ORF1ab/nsp2237H237YCatTat11B.1.5560.007519
ORF1ab/nsp2237H237YCatTat11B.1.5600.00463
ORF1ab/nsp2237H237YCatTat11B.1.5610.000397
ORF1ab/nsp2237H237YCatTat11B.1.575.10.002439
ORF1ab/nsp2237H237YCatTat11B.1.5900.004545
ORF1ab/nsp2237H237YCatTat11B.1.5950.000261
ORF1ab/nsp2237H237YCatTat11B.1.6000.005848
ORF1ab/nsp2237H237YCatTat11B.1.6090.000479
ORF1ab/nsp2237H237YCatTat11B.1.810.021277
ORF1ab/nsp2237H237YCatTat11B.1.9.50.005682
ORF1ab/nsp2237H237YCatTat11B.3.10.001658
ORF1ab/nsp2237H237YCatTat11P.1.170.000162
ORF1ab/nsp2237H237YCatTat11P.1.70.000319
ORF1ab/nsp2237H237YCatTat11Q.30.000145
ORF1ab/nsp2237H237YCatTat11S.10.00495

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.