CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = G285S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2285G285SG465SnonsynGgtAgt27427411658-1660

Details of the mutation G285S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2285G285SGgtAgt274274All0.000052
ORF1ab/nsp2285G285SGgtAgt6565B.1.351.20.019667
ORF1ab/nsp2285G285SGgtAgt5656AY.340.00543
ORF1ab/nsp2285G285SGgtAgt2020B.1.617.20.000075
ORF1ab/nsp2285G285SGgtAgt1717B.1.1.70.000015
ORF1ab/nsp2285G285SGgtAgt1616B.1.4290.000376
ORF1ab/nsp2285G285SGgtAgt1616B.1.5250.001811
ORF1ab/nsp2285G285SGgtAgt1414AY.440.000085
ORF1ab/nsp2285G285SGgtAgt77AY.40.000011
ORF1ab/nsp2285G285SGgtAgt77AY.430.000031
ORF1ab/nsp2285G285SGgtAgt66A.20.003971
ORF1ab/nsp2285G285SGgtAgt55AY.200.000194
ORF1ab/nsp2285G285SGgtAgt55AY.590.002648
ORF1ab/nsp2285G285SGgtAgt44B.1.2580.000266
ORF1ab/nsp2285G285SGgtAgt33AY.1190.000106
ORF1ab/nsp2285G285SGgtAgt33AY.30.00003
ORF1ab/nsp2285G285SGgtAgt33B.1.5960.000261
ORF1ab/nsp2285G285SGgtAgt22AY.1030.000012
ORF1ab/nsp2285G285SGgtAgt22AY.4.20.000043
ORF1ab/nsp2285G285SGgtAgt22B.10.000018
ORF1ab/nsp2285G285SGgtAgt22B.1.3510.000059
ORF1ab/nsp2285G285SGgtAgt22P.1.150.000465
ORF1ab/nsp2285G285SGgtAgt22Q.10.000253
ORF1ab/nsp2285G285SGgtAgt11AY.1000.000046
ORF1ab/nsp2285G285SGgtAgt11AY.250.000006
ORF1ab/nsp2285G285SGgtAgt11AY.260.000028
ORF1ab/nsp2285G285SGgtAgt11AY.39.10.00004
ORF1ab/nsp2285G285SGgtAgt11AY.420.00004
ORF1ab/nsp2285G285SGgtAgt11AY.450.000122
ORF1ab/nsp2285G285SGgtAgt11AY.690.000187
ORF1ab/nsp2285G285SGgtAgt11AY.99.20.000092
ORF1ab/nsp2285G285SGgtAgt11B.1.1.10.000327
ORF1ab/nsp2285G285SGgtAgt11B.1.1.3480.000796
ORF1ab/nsp2285G285SGgtAgt11B.1.1770.000013
ORF1ab/nsp2285G285SGgtAgt11B.1.177.520.001757
ORF1ab/nsp2285G285SGgtAgt11B.1.3690.000285
ORF1ab/nsp2285G285SGgtAgt11B.1.4270.00005
ORF1ab/nsp2285G285SGgtAgt11C.36.30.000567

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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