CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = G285G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2285G285GG465GsynggTggC92850.9239131658-1660
ORF1ab/nsp2285G285GG465GsynggTggA9260.06521741658-1660
ORF1ab/nsp2285G285GG465GsynggTggG9210.01086961658-1660

Details of the mutation G285G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2285G285GggTggC8592All0.000016
ORF1ab/nsp2285G285GggTggA692All0.000001
ORF1ab/nsp2285G285GggTggG192All0
ORF1ab/nsp2285G285GggTggC1616AY.430.000071
ORF1ab/nsp2285G285GggTggC910B.1.1.70.000008
ORF1ab/nsp2285G285GggTggA110B.1.1.70.000001
ORF1ab/nsp2285G285GggTggC910B.1.617.20.000034
ORF1ab/nsp2285G285GggTggA110B.1.617.20.000004
ORF1ab/nsp2285G285GggTggC77AY.390.000173
ORF1ab/nsp2285G285GggTggC77AY.440.000043
ORF1ab/nsp2285G285GggTggC66AY.1030.000037
ORF1ab/nsp2285G285GggTggC55AY.46.30.004669
ORF1ab/nsp2285G285GggTggC55B.1.5750.001517
ORF1ab/nsp2285G285GggTggC33AY.50.000062
ORF1ab/nsp2285G285GggTggA220.111111
ORF1ab/nsp2285G285GggTggC22AY.750.000112
ORF1ab/nsp2285G285GggTggA12B.10.000009
ORF1ab/nsp2285G285GggTggC12B.10.000009
ORF1ab/nsp2285G285GggTggC22B.1.1770.000026
ORF1ab/nsp2285G285GggTggC11AY.230.00007
ORF1ab/nsp2285G285GggTggC11AY.40.000002
ORF1ab/nsp2285G285GggTggC11AY.450.000122
ORF1ab/nsp2285G285GggTggC11AY.460.000104
ORF1ab/nsp2285G285GggTggC11AY.880.000884
ORF1ab/nsp2285G285GggTggC11B.1.1.390.00051
ORF1ab/nsp2285G285GggTggA11B.1.177.400.005155
ORF1ab/nsp2285G285GggTggC11B.1.20.000009
ORF1ab/nsp2285G285GggTggC11B.1.2210.000071
ORF1ab/nsp2285G285GggTggC11B.1.2430.00007
ORF1ab/nsp2285G285GggTggG11B.1.36.290.000517
ORF1ab/nsp2285G285GggTggC11B.6.60.000889
ORF1ab/nsp2285G285GggTggC11D.20.000075
ORF1ab/nsp2285G285GggTggC11N.40.004255
ORF1ab/nsp2285G285GggTggC11P.1.170.000162

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.