CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = G285C

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2285G285CG465CnonsynGgtTgt565611658-1660

Details of the mutation G285C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2285G285CGgtTgt5656All0.000011
ORF1ab/nsp2285G285CGgtTgt1313B.1.4690.046931
ORF1ab/nsp2285G285CGgtTgt88AY.40.000012
ORF1ab/nsp2285G285CGgtTgt66B.1.1.70.000005
ORF1ab/nsp2285G285CGgtTgt55B.10.000046
ORF1ab/nsp2285G285CGgtTgt22AY.1030.000012
ORF1ab/nsp2285G285CGgtTgt22AY.440.000012
ORF1ab/nsp2285G285CGgtTgt22B.1.10.000036
ORF1ab/nsp2285G285CGgtTgt22B.1.5260.000047
ORF1ab/nsp2285G285CGgtTgt22D.20.00015
ORF1ab/nsp2285G285CGgtTgt11AY.1020.000027
ORF1ab/nsp2285G285CGgtTgt11AY.260.000028
ORF1ab/nsp2285G285CGgtTgt11AY.30.00001
ORF1ab/nsp2285G285CGgtTgt11AY.430.000004
ORF1ab/nsp2285G285CGgtTgt11AY.460.000104
ORF1ab/nsp2285G285CGgtTgt11AY.9.20.000037
ORF1ab/nsp2285G285CGgtTgt11B.1.1.1760.000439
ORF1ab/nsp2285G285CGgtTgt11B.1.1.2220.000204
ORF1ab/nsp2285G285CGgtTgt11B.1.1770.000013
ORF1ab/nsp2285G285CGgtTgt11B.1.177.820.000477
ORF1ab/nsp2285G285CGgtTgt11B.1.20.000009
ORF1ab/nsp2285G285CGgtTgt11B.1.258.170.000104
ORF1ab/nsp2285G285CGgtTgt11B.1.5960.000087
ORF1ab/nsp2285G285CGgtTgt11B.60.00091

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.