CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 220 | G220S | G400S | nonsyn | Ggt | Agt | 1833 | 1833 | 1 | 1463-1465 |
Details of the mutation G220S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1833 | 1833 | All | 0.000351 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 741 | 741 | B.1.361 | 0.954897 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 204 | 204 | AY.103 | 0.001267 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 94 | 94 | B.1.1.7 | 0.000084 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 91 | 91 | AY.4 | 0.000142 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 81 | 81 | B.1 | 0.000742 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 55 | 55 | B.1.2 | 0.000484 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 53 | 53 | B.1.1 | 0.000961 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 47 | 47 | B.1.617.2 | 0.000177 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 38 | 38 | AY.20 | 0.001477 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 35 | 35 | B.1.330 | 1 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 23 | 23 | A.2.5 | 0.011477 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 23 | 23 | AY.121 | 0.003112 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 19 | 19 | B.1.258 | 0.001264 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 15 | 15 | B.1.429 | 0.000353 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 15 | 15 | B.1.596 | 0.001307 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 14 | 14 | AY.3 | 0.000139 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 14 | 14 | B.1.617.1 | 0.001806 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 13 | 13 | AY.25 | 0.000078 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 12 | 12 | AY.43 | 0.000053 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 12 | 12 | AY.75 | 0.000672 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 12 | 12 | P.1 | 0.000189 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 11 | 11 | AY.100 | 0.000506 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 11 | 11 | B.1.177.86 | 0.002018 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 10 | 10 | AY.30 | 0.003957 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 10 | 10 | B.1.258.14 | 0.009804 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 9 | 9 | AY.4.2 | 0.000195 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 7 | 7 | B.1.177 | 0.000092 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 6 | 6 | AY.98.1 | 0.000291 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 6 | 6 | B.1.160 | 0.000187 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 6 | 6 | B.1.595 | 0.001566 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 5 | 5 | A.21 | 0.01385 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 5 | 5 | B.1.221 | 0.000355 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 5 | 5 | B.1.568 | 0.005556 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 5 | 5 | B.1.580 | 0.020325 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 4 | 4 | B.1.1.461 | 0.048193 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 3 | 3 | AY.114 | 0.000693 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 3 | 3 | AY.48 | 0.001395 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 3 | 3 | B.1.351.2 | 0.000908 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 2 | 2 | B.1.1.243 | 0.008163 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 2 | 2 | B.1.250 | 0.028986 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 2 | 2 | B.1.351.5 | 0.001199 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 2 | 2 | B.1.448 | 0.005249 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | B.1.1.118 | 0.010204 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | B.1.115 | 0.021739 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | B.1.165 | 0.011905 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | B.1.417 | 0.028571 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | B.1.595.3 | 0.026316 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp2 | 220 | G220S | Ggt | Agt | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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