CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = G165S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2165G165SG345SnonsynGgcAgc24924911298-1300

Details of the mutation G165S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2165G165SGgcAgc249249All0.000048
ORF1ab/nsp2165G165SGgcAgc7474B.1.3850.787234
ORF1ab/nsp2165G165SGgcAgc4646B.1.4370.958333
ORF1ab/nsp2165G165SGgcAgc2323B.1.1.70.000021
ORF1ab/nsp2165G165SGgcAgc1515B.1.617.20.000056
ORF1ab/nsp2165G165SGgcAgc1414AY.40.000022
ORF1ab/nsp2165G165SGgcAgc1111B.1.1600.000343
ORF1ab/nsp2165G165SGgcAgc55AY.1190.000177
ORF1ab/nsp2165G165SGgcAgc55AY.250.00003
ORF1ab/nsp2165G165SGgcAgc44B.10.000037
ORF1ab/nsp2165G165SGgcAgc44B.1.1770.000053
ORF1ab/nsp2165G165SGgcAgc33AY.430.000013
ORF1ab/nsp2165G165SGgcAgc33B.1.5260.000071
ORF1ab/nsp2165G165SGgcAgc33B.1.5960.000261
ORF1ab/nsp2165G165SGgcAgc22AY.1200.000074
ORF1ab/nsp2165G165SGgcAgc22AY.270.000129
ORF1ab/nsp2165G165SGgcAgc22AY.460.000208
ORF1ab/nsp2165G165SGgcAgc22AY.510.001818
ORF1ab/nsp2165G165SGgcAgc22B.1.1.1740.006757
ORF1ab/nsp2165G165SGgcAgc22B.1.2400.000431
ORF1ab/nsp2165G165SGgcAgc22B.1.4160.002538
ORF1ab/nsp2165G165SGgcAgc22B.1.4480.005249
ORF1ab/nsp2165G165SGgcAgc11AY.1020.000027
ORF1ab/nsp2165G165SGgcAgc11AY.1030.000006
ORF1ab/nsp2165G165SGgcAgc11AY.1180.000063
ORF1ab/nsp2165G165SGgcAgc11AY.230.00007
ORF1ab/nsp2165G165SGgcAgc11AY.340.000097
ORF1ab/nsp2165G165SGgcAgc11AY.380.000499
ORF1ab/nsp2165G165SGgcAgc11AY.390.000025
ORF1ab/nsp2165G165SGgcAgc11AY.4.50.000107
ORF1ab/nsp2165G165SGgcAgc11AY.440.000006
ORF1ab/nsp2165G165SGgcAgc11AY.950.000761
ORF1ab/nsp2165G165SGgcAgc11B0.000128
ORF1ab/nsp2165G165SGgcAgc11B.1.1.280.000311
ORF1ab/nsp2165G165SGgcAgc11B.1.177.250.014925
ORF1ab/nsp2165G165SGgcAgc11B.1.1950.005025
ORF1ab/nsp2165G165SGgcAgc11B.1.20.000009
ORF1ab/nsp2165G165SGgcAgc11B.1.3510.00003
ORF1ab/nsp2165G165SGgcAgc11B.1.4290.000024
ORF1ab/nsp2165G165SGgcAgc11B.1.438.10.000107
ORF1ab/nsp2165G165SGgcAgc11B.1.5210.004975
ORF1ab/nsp2165G165SGgcAgc11B.1.6200.000946
ORF1ab/nsp2165G165SGgcAgc11B.1.6210.000089
ORF1ab/nsp2165G165SGgcAgc11C.370.000116
ORF1ab/nsp2165G165SGgcAgc11P.10.000016

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.