CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = G165G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2165G165GG345GsynggCggT146714300.9747781298-1300
ORF1ab/nsp2165G165GG345GsynggCggA1467330.02249491298-1300
ORF1ab/nsp2165G165GG345GsynggCggG146740.002726651298-1300

Details of the mutation G165G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2165G165GggCggT14301467All0.000274
ORF1ab/nsp2165G165GggCggA331467All0.000006
ORF1ab/nsp2165G165GggCggG41467All0.000001
ORF1ab/nsp2165G165GggCggT353353AY.40.000549
ORF1ab/nsp2165G165GggCggT289289AY.330.019299
ORF1ab/nsp2165G165GggCggT273284B.1.1.70.000244
ORF1ab/nsp2165G165GggCggA11284B.1.1.70.00001
ORF1ab/nsp2165G165GggCggT7373AY.250.000439
ORF1ab/nsp2165G165GggCggT5757B.1.5391
ORF1ab/nsp2165G165GggCggT4444AY.430.000195
ORF1ab/nsp2165G165GggCggT3334B.1.20.000291
ORF1ab/nsp2165G165GggCggA134B.1.20.000009
ORF1ab/nsp2165G165GggCggT3030B.1.1.5190.001191
ORF1ab/nsp2165G165GggCggT2627AY.440.000158
ORF1ab/nsp2165G165GggCggA127AY.440.000006
ORF1ab/nsp2165G165GggCggT2224B.1.617.20.000083
ORF1ab/nsp2165G165GggCggG224B.1.617.20.000008
ORF1ab/nsp2165G165GggCggT2122B.10.000192
ORF1ab/nsp2165G165GggCggG122B.10.000009
ORF1ab/nsp2165G165GggCggT2222P.10.000347
ORF1ab/nsp2165G165GggCggT1414B.1.617.10.001806
ORF1ab/nsp2165G165GggCggT1212B.1.5960.001046
ORF1ab/nsp2165G165GggCggT89B.1.4290.000188
ORF1ab/nsp2165G165GggCggA19B.1.4290.000024
ORF1ab/nsp2165G165GggCggA88B.1.1600.00025
ORF1ab/nsp2165G165GggCggT77AY.1190.000247
ORF1ab/nsp2165G165GggCggT77AY.230.000488
ORF1ab/nsp2165G165GggCggT77B.1.1770.000092
ORF1ab/nsp2165G165GggCggT66AY.1030.000037
ORF1ab/nsp2165G165GggCggT66AY.34.10.00306
ORF1ab/nsp2165G165GggCggT66B.1.1.2140.000333
ORF1ab/nsp2165G165GggCggT66B.1.177.870.004367
ORF1ab/nsp2165G165GggCggT55AY.200.000194
ORF1ab/nsp2165G165GggCggT45AY.390.000099
ORF1ab/nsp2165G165GggCggA15AY.390.000025
ORF1ab/nsp2165G165GggCggT45AY.610.000419
ORF1ab/nsp2165G165GggCggA15AY.610.000105
ORF1ab/nsp2165G165GggCggT55AY.9.20.000184
ORF1ab/nsp2165G165GggCggT44AY.30.00004
ORF1ab/nsp2165G165GggCggT44B.1.3490.002859
ORF1ab/nsp2165G165GggCggT44B.1.5880.00364
ORF1ab/nsp2165G165GggCggA33AY.340.000291
ORF1ab/nsp2165G165GggCggT33AY.50.000062
ORF1ab/nsp2165G165GggCggA33B.1.4040.003906
ORF1ab/nsp2165G165GggCggT22AY.1000.000092
ORF1ab/nsp2165G165GggCggT22AY.1100.000225
ORF1ab/nsp2165G165GggCggT22AY.260.000057
ORF1ab/nsp2165G165GggCggT22AY.60.000082
ORF1ab/nsp2165G165GggCggT22AY.90.000135
ORF1ab/nsp2165G165GggCggT22B.1.1.2160.001781
ORF1ab/nsp2165G165GggCggT22B.1.1.2280.006098
ORF1ab/nsp2165G165GggCggT22B.1.1.4200.002012
ORF1ab/nsp2165G165GggCggT22B.1.1420.005797
ORF1ab/nsp2165G165GggCggT22B.1.177.520.003515
ORF1ab/nsp2165G165GggCggT22B.1.2210.000142
ORF1ab/nsp2165G165GggCggT22B.1.5820.000981
ORF1ab/nsp2165G165GggCggT22B.1.6090.000959
ORF1ab/nsp2165G165GggCggT22B.1.6210.000177
ORF1ab/nsp2165G165GggCggT22B.1.6280.000705
ORF1ab/nsp2165G165GggCggG110.055556
ORF1ab/nsp2165G165GggCggT11A.2.50.000499
ORF1ab/nsp2165G165GggCggT11AE.80.000489
ORF1ab/nsp2165G165GggCggT11AY.1020.000027
ORF1ab/nsp2165G165GggCggT11AY.1170.000085
ORF1ab/nsp2165G165GggCggT11AY.120.10.000321
ORF1ab/nsp2165G165GggCggT11AY.120.20.001285
ORF1ab/nsp2165G165GggCggT11AY.240.000431
ORF1ab/nsp2165G165GggCggT11AY.270.000065
ORF1ab/nsp2165G165GggCggA11AY.4.50.000107
ORF1ab/nsp2165G165GggCggT11AY.420.00004
ORF1ab/nsp2165G165GggCggT11AY.460.000104
ORF1ab/nsp2165G165GggCggT11AY.46.40.000165
ORF1ab/nsp2165G165GggCggT11AY.480.000465
ORF1ab/nsp2165G165GggCggT11AY.540.000095
ORF1ab/nsp2165G165GggCggT11AY.750.000056
ORF1ab/nsp2165G165GggCggT11AY.860.00083
ORF1ab/nsp2165G165GggCggT11AY.910.00073
ORF1ab/nsp2165G165GggCggT11AY.98.10.000048
ORF1ab/nsp2165G165GggCggT11B.1.10.000018
ORF1ab/nsp2165G165GggCggT11B.1.1.1340.011364
ORF1ab/nsp2165G165GggCggT11B.1.1.1920.002309
ORF1ab/nsp2165G165GggCggT11B.1.1.280.000311
ORF1ab/nsp2165G165GggCggT11B.1.1.2880.001916
ORF1ab/nsp2165G165GggCggT11B.1.1.3170.000412
ORF1ab/nsp2165G165GggCggT11B.1.1.4160.000905
ORF1ab/nsp2165G165GggCggT11B.1.177.40.000211
ORF1ab/nsp2165G165GggCggT11B.1.177.600.000218
ORF1ab/nsp2165G165GggCggT11B.1.177.80.000752
ORF1ab/nsp2165G165GggCggT11B.1.177.840.006667
ORF1ab/nsp2165G165GggCggT11B.1.3510.00003
ORF1ab/nsp2165G165GggCggT11B.1.3560.001727
ORF1ab/nsp2165G165GggCggT11B.1.360.000146
ORF1ab/nsp2165G165GggCggT11B.1.4090.000781
ORF1ab/nsp2165G165GggCggT11B.1.4160.001269
ORF1ab/nsp2165G165GggCggT11B.1.4270.00005
ORF1ab/nsp2165G165GggCggT11B.1.5260.000024
ORF1ab/nsp2165G165GggCggA11B.1.5460.003704
ORF1ab/nsp2165G165GggCggT11B.60.00091
ORF1ab/nsp2165G165GggCggT11C.350.000774
ORF1ab/nsp2165G165GggCggT11C.370.000116
ORF1ab/nsp2165G165GggCggT11N.30.005814
ORF1ab/nsp2165G165GggCggT11N.90.005952
ORF1ab/nsp2165G165GggCggT11P.1.150.000232
ORF1ab/nsp2165G165GggCggT11P.1.170.000162
ORF1ab/nsp2165G165GggCggT11Q.10.000126
ORF1ab/nsp2165G165GggCggT11Q.30.000145
ORF1ab/nsp2165G165GggCggT11Q.80.000165
ORF1ab/nsp2165G165GggCggA11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.