CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 165 | G165G | G345G | syn | ggC | ggT | 1467 | 1430 | 0.974778 | 1298-1300 |
ORF1ab/nsp2 | 165 | G165G | G345G | syn | ggC | ggA | 1467 | 33 | 0.0224949 | 1298-1300 |
ORF1ab/nsp2 | 165 | G165G | G345G | syn | ggC | ggG | 1467 | 4 | 0.00272665 | 1298-1300 |
Details of the mutation G165G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1430 | 1467 | All | 0.000274 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggA | 33 | 1467 | All | 0.000006 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggG | 4 | 1467 | All | 0.000001 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 353 | 353 | AY.4 | 0.000549 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 289 | 289 | AY.33 | 0.019299 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 273 | 284 | B.1.1.7 | 0.000244 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggA | 11 | 284 | B.1.1.7 | 0.00001 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 73 | 73 | AY.25 | 0.000439 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 57 | 57 | B.1.539 | 1 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 44 | 44 | AY.43 | 0.000195 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 33 | 34 | B.1.2 | 0.000291 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggA | 1 | 34 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 30 | 30 | B.1.1.519 | 0.001191 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 26 | 27 | AY.44 | 0.000158 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggA | 1 | 27 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 22 | 24 | B.1.617.2 | 0.000083 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggG | 2 | 24 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 21 | 22 | B.1 | 0.000192 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggG | 1 | 22 | B.1 | 0.000009 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 22 | 22 | P.1 | 0.000347 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 14 | 14 | B.1.617.1 | 0.001806 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 12 | 12 | B.1.596 | 0.001046 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 8 | 9 | B.1.429 | 0.000188 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggA | 1 | 9 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggA | 8 | 8 | B.1.160 | 0.00025 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 7 | 7 | AY.119 | 0.000247 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 7 | 7 | AY.23 | 0.000488 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 7 | 7 | B.1.177 | 0.000092 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 6 | 6 | AY.34.1 | 0.00306 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 6 | 6 | B.1.1.214 | 0.000333 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 6 | 6 | B.1.177.87 | 0.004367 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 4 | 5 | AY.39 | 0.000099 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggA | 1 | 5 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 4 | 5 | AY.61 | 0.000419 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggA | 1 | 5 | AY.61 | 0.000105 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 5 | 5 | AY.9.2 | 0.000184 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 4 | 4 | B.1.349 | 0.002859 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 4 | 4 | B.1.588 | 0.00364 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggA | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggA | 3 | 3 | B.1.404 | 0.003906 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 2 | 2 | B.1.1.228 | 0.006098 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 2 | 2 | B.1.1.420 | 0.002012 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 2 | 2 | B.1.142 | 0.005797 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 2 | 2 | B.1.177.52 | 0.003515 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggG | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggA | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | B.1.1.134 | 0.011364 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | B.1.1.288 | 0.001916 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | B.1.177.84 | 0.006667 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggA | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggT | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp2 | 165 | G165G | ggC | ggA | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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