CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = G15G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp215G15GG195GsynggCggT160314190.885215848-850
ORF1ab/nsp215G15GG195GsynggCggA16031820.113537848-850
ORF1ab/nsp215G15GG195GsynggCggG160320.00124766848-850

Details of the mutation G15G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp215G15GggCggT14191603All0.000271
ORF1ab/nsp215G15GggCggA1821603All0.000035
ORF1ab/nsp215G15GggCggG21603All0
ORF1ab/nsp215G15GggCggT634646B.1.1.70.000568
ORF1ab/nsp215G15GggCggA12646B.1.1.70.000011
ORF1ab/nsp215G15GggCggT156163AY.40.000243
ORF1ab/nsp215G15GggCggA7163AY.40.000011
ORF1ab/nsp215G15GggCggT110110AA.41
ORF1ab/nsp215G15GggCggT3162AY.430.000137
ORF1ab/nsp215G15GggCggA3162AY.430.000137
ORF1ab/nsp215G15GggCggA4760AY.250.000283
ORF1ab/nsp215G15GggCggT1360AY.250.000078
ORF1ab/nsp215G15GggCggT4549B.1.617.20.000169
ORF1ab/nsp215G15GggCggA449B.1.617.20.000015
ORF1ab/nsp215G15GggCggT2839AY.440.00017
ORF1ab/nsp215G15GggCggA1139AY.440.000067
ORF1ab/nsp215G15GggCggA3237AY.260.000906
ORF1ab/nsp215G15GggCggT537AY.260.000142
ORF1ab/nsp215G15GggCggT3535B.1.1.2220.00714
ORF1ab/nsp215G15GggCggT2020B.1.1770.000263
ORF1ab/nsp215G15GggCggT1619P.10.000252
ORF1ab/nsp215G15GggCggA319P.10.000047
ORF1ab/nsp215G15GggCggT1518B.1.20.000132
ORF1ab/nsp215G15GggCggA318B.1.20.000026
ORF1ab/nsp215G15GggCggT1717P.1.150.00395
ORF1ab/nsp215G15GggCggT1116B.10.000101
ORF1ab/nsp215G15GggCggA516B.10.000046
ORF1ab/nsp215G15GggCggT1515AY.1020.000398
ORF1ab/nsp215G15GggCggT1414AY.290.000221
ORF1ab/nsp215G15GggCggT1313B.1.1.280.004046
ORF1ab/nsp215G15GggCggT1313B.1.1600.000405
ORF1ab/nsp215G15GggCggT712AY.30.00007
ORF1ab/nsp215G15GggCggA512AY.30.00005
ORF1ab/nsp215G15GggCggT1212AY.98.10.000581
ORF1ab/nsp215G15GggCggT1111B.1.1.2140.00061
ORF1ab/nsp215G15GggCggT1010P.1.70.003193
ORF1ab/nsp215G15GggCggT89AY.4.20.000174
ORF1ab/nsp215G15GggCggG19AY.4.20.000022
ORF1ab/nsp215G15GggCggT99AY.50.000186
ORF1ab/nsp215G15GggCggT78AY.1030.000043
ORF1ab/nsp215G15GggCggA18AY.1030.000006
ORF1ab/nsp215G15GggCggT88B.1.177.870.005822
ORF1ab/nsp215G15GggCggT88B.1.4270.000404
ORF1ab/nsp215G15GggCggT88B.1.5260.000188
ORF1ab/nsp215G15GggCggT77B0.000895
ORF1ab/nsp215G15GggCggT77B.1.5250.000792
ORF1ab/nsp215G15GggCggT66AY.390.000148
ORF1ab/nsp215G15GggCggT56AY.470.000156
ORF1ab/nsp215G15GggCggA16AY.470.000031
ORF1ab/nsp215G15GggCggT66AY.7.10.000676
ORF1ab/nsp215G15GggCggT46B.1.4290.000094
ORF1ab/nsp215G15GggCggA26B.1.4290.000047
ORF1ab/nsp215G15GggCggT44AY.200.000155
ORF1ab/nsp215G15GggCggT24AY.340.000194
ORF1ab/nsp215G15GggCggA24AY.340.000194
ORF1ab/nsp215G15GggCggT44AY.360.000593
ORF1ab/nsp215G15GggCggT44AY.610.000419
ORF1ab/nsp215G15GggCggT44B.1.1.1390.090909
ORF1ab/nsp215G15GggCggT33AY.1190.000106
ORF1ab/nsp215G15GggCggT33AY.75.10.000541
ORF1ab/nsp215G15GggCggT33AY.9.20.00011
ORF1ab/nsp215G15GggCggT33B.1.1.2740.015152
ORF1ab/nsp215G15GggCggT33B.1.1.700.001023
ORF1ab/nsp215G15GggCggA33B.1.4280.003061
ORF1ab/nsp215G15GggCggT33B.4.80.214286
ORF1ab/nsp215G15GggCggA120.055556
ORF1ab/nsp215G15GggCggG120.055556
ORF1ab/nsp215G15GggCggT22A0.000774
ORF1ab/nsp215G15GggCggT22A.23.10.001408
ORF1ab/nsp215G15GggCggT22AY.1160.000574
ORF1ab/nsp215G15GggCggT22AY.330.000134
ORF1ab/nsp215G15GggCggT22AY.460.000208
ORF1ab/nsp215G15GggCggT22AY.750.000112
ORF1ab/nsp215G15GggCggT22B.1.1.3640.133333
ORF1ab/nsp215G15GggCggT22B.1.1.5190.000079
ORF1ab/nsp215G15GggCggT22B.1.177.730.001133
ORF1ab/nsp215G15GggCggA22B.1.2400.000431
ORF1ab/nsp215G15GggCggT22B.1.3510.000059
ORF1ab/nsp215G15GggCggT22B.1.360.000292
ORF1ab/nsp215G15GggCggA22B.1.4160.002538
ORF1ab/nsp215G15GggCggT22B.1.4530.006472
ORF1ab/nsp215G15GggCggT22C.360.001821
ORF1ab/nsp215G15GggCggT11A.2.50.000499
ORF1ab/nsp215G15GggCggT11A.50.001923
ORF1ab/nsp215G15GggCggT11AY.1000.000046
ORF1ab/nsp215G15GggCggA11AY.1130.000142
ORF1ab/nsp215G15GggCggA11AY.1170.000085
ORF1ab/nsp215G15GggCggT11AY.16.10.00047
ORF1ab/nsp215G15GggCggT11AY.230.00007
ORF1ab/nsp215G15GggCggA11AY.4.2.10.000149
ORF1ab/nsp215G15GggCggT11AY.4.50.000107
ORF1ab/nsp215G15GggCggT11AY.450.000122
ORF1ab/nsp215G15GggCggT11AY.46.40.000165
ORF1ab/nsp215G15GggCggT11AY.560.001605
ORF1ab/nsp215G15GggCggT11AY.60.000041
ORF1ab/nsp215G15GggCggT11AY.840.000437
ORF1ab/nsp215G15GggCggT11AY.9.10.000084
ORF1ab/nsp215G15GggCggT11AY.980.000079
ORF1ab/nsp215G15GggCggT11AY.990.001049
ORF1ab/nsp215G15GggCggT11AY.99.20.000092
ORF1ab/nsp215G15GggCggT11B.1.10.000018
ORF1ab/nsp215G15GggCggT11B.1.1.10.000327
ORF1ab/nsp215G15GggCggT11B.1.1.100.001115
ORF1ab/nsp215G15GggCggT11B.1.1.1890.001513
ORF1ab/nsp215G15GggCggT11B.1.1.250.000569
ORF1ab/nsp215G15GggCggT11B.1.1.2840.000107
ORF1ab/nsp215G15GggCggT11B.1.1.3160.000925
ORF1ab/nsp215G15GggCggT11B.1.1.3180.000302
ORF1ab/nsp215G15GggCggT11B.1.1.3260.001761
ORF1ab/nsp215G15GggCggT11B.1.1.3880.045455
ORF1ab/nsp215G15GggCggT11B.1.1.400.034483
ORF1ab/nsp215G15GggCggT11B.1.1280.000635
ORF1ab/nsp215G15GggCggA11B.1.177.40.000211
ORF1ab/nsp215G15GggCggT11B.1.177.570.000281
ORF1ab/nsp215G15GggCggT11B.1.177.810.000189
ORF1ab/nsp215G15GggCggT11B.1.2540.025
ORF1ab/nsp215G15GggCggT11B.1.2580.000067
ORF1ab/nsp215G15GggCggT11B.1.36.180.00042
ORF1ab/nsp215G15GggCggT11B.1.36.380.001642
ORF1ab/nsp215G15GggCggT11B.1.3670.000792
ORF1ab/nsp215G15GggCggT11B.1.5020.052632
ORF1ab/nsp215G15GggCggT11B.1.5800.004065
ORF1ab/nsp215G15GggCggA11B.1.5950.000261
ORF1ab/nsp215G15GggCggT11B.1.617.10.000129
ORF1ab/nsp215G15GggCggA11B.1.6280.000352
ORF1ab/nsp215G15GggCggT11B.1.780.008547
ORF1ab/nsp215G15GggCggT11B.560.028571
ORF1ab/nsp215G15GggCggT11B.60.00091
ORF1ab/nsp215G15GggCggT11C.20.016129
ORF1ab/nsp215G15GggCggA11D.20.000075
ORF1ab/nsp215G15GggCggT11D.50.004975
ORF1ab/nsp215G15GggCggA11P.1.140.000048
ORF1ab/nsp215G15GggCggT11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.