CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = G12G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp212G12GG192GsynggCggT304826240.860892839-841
ORF1ab/nsp212G12GG192GsynggCggA30484160.136483839-841
ORF1ab/nsp212G12GG192GsynggCggG304880.00262467839-841

Details of the mutation G12G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp212G12GggCggT26243048All0.000502
ORF1ab/nsp212G12GggCggA4163048All0.00008
ORF1ab/nsp212G12GggCggG83048All0.000002
ORF1ab/nsp212G12GggCggT13131451B.1.1.70.001175
ORF1ab/nsp212G12GggCggA1381451B.1.1.70.000124
ORF1ab/nsp212G12GggCggT285285B.1.6340.976027
ORF1ab/nsp212G12GggCggA99170AY.40.000154
ORF1ab/nsp212G12GggCggT71170AY.40.000111
ORF1ab/nsp212G12GggCggT155165B.1.617.20.000584
ORF1ab/nsp212G12GggCggA10165B.1.617.20.000038
ORF1ab/nsp212G12GggCggT148148B.1.2320.079527
ORF1ab/nsp212G12GggCggT3767B.1.20.000326
ORF1ab/nsp212G12GggCggA3067B.1.20.000264
ORF1ab/nsp212G12GggCggT6666B.1.2580.004392
ORF1ab/nsp212G12GggCggT6464AY.360.009486
ORF1ab/nsp212G12GggCggT4345AY.1020.00114
ORF1ab/nsp212G12GggCggA245AY.1020.000053
ORF1ab/nsp212G12GggCggT2745B.10.000247
ORF1ab/nsp212G12GggCggA1145B.10.000101
ORF1ab/nsp212G12GggCggG745B.10.000064
ORF1ab/nsp212G12GggCggT2929B.1.177.210.002218
ORF1ab/nsp212G12GggCggT2626B.1.5670.086667
ORF1ab/nsp212G12GggCggT2425AY.460.002498
ORF1ab/nsp212G12GggCggA125AY.460.000104
ORF1ab/nsp212G12GggCggT2124AY.250.000126
ORF1ab/nsp212G12GggCggA324AY.250.000018
ORF1ab/nsp212G12GggCggT2424D.20.001801
ORF1ab/nsp212G12GggCggT2222B.1.2310.709677
ORF1ab/nsp212G12GggCggT1721AY.440.000103
ORF1ab/nsp212G12GggCggA421AY.440.000024
ORF1ab/nsp212G12GggCggT2121B.1.1310.184211
ORF1ab/nsp212G12GggCggT1618AY.30.000159
ORF1ab/nsp212G12GggCggA218AY.30.00002
ORF1ab/nsp212G12GggCggT1018B.1.10.000181
ORF1ab/nsp212G12GggCggA718B.1.10.000127
ORF1ab/nsp212G12GggCggG118B.1.10.000018
ORF1ab/nsp212G12GggCggT1015AY.430.000044
ORF1ab/nsp212G12GggCggA515AY.430.000022
ORF1ab/nsp212G12GggCggT1015B.1.1770.000132
ORF1ab/nsp212G12GggCggA515B.1.1770.000066
ORF1ab/nsp212G12GggCggT1213AY.1030.000075
ORF1ab/nsp212G12GggCggA113AY.1030.000006
ORF1ab/nsp212G12GggCggT1111B.1.1.370.002122
ORF1ab/nsp212G12GggCggA610B.1.3510.000178
ORF1ab/nsp212G12GggCggT410B.1.3510.000119
ORF1ab/nsp212G12GggCggT99AY.4.20.000195
ORF1ab/nsp212G12GggCggT88AY.1000.000368
ORF1ab/nsp212G12GggCggT48AY.1200.000149
ORF1ab/nsp212G12GggCggA48AY.1200.000149
ORF1ab/nsp212G12GggCggT77AY.1190.000247
ORF1ab/nsp212G12GggCggT47AY.200.000155
ORF1ab/nsp212G12GggCggA37AY.200.000117
ORF1ab/nsp212G12GggCggA56AY.50.000103
ORF1ab/nsp212G12GggCggT16AY.50.000021
ORF1ab/nsp212G12GggCggT46B.1.351.50.002398
ORF1ab/nsp212G12GggCggA26B.1.351.50.001199
ORF1ab/nsp212G12GggCggA66B.1.5250.000679
ORF1ab/nsp212G12GggCggT55AY.390.000124
ORF1ab/nsp212G12GggCggT45B.1.1.3740.009501
ORF1ab/nsp212G12GggCggA15B.1.1.3740.002375
ORF1ab/nsp212G12GggCggT45B.1.5260.000094
ORF1ab/nsp212G12GggCggA15B.1.5260.000024
ORF1ab/nsp212G12GggCggT45P.10.000063
ORF1ab/nsp212G12GggCggA15P.10.000016
ORF1ab/nsp212G12GggCggA44AE.60.153846
ORF1ab/nsp212G12GggCggT44AY.9.20.000147
ORF1ab/nsp212G12GggCggT44B.1.5950.001044
ORF1ab/nsp212G12GggCggA34B.1.5960.000261
ORF1ab/nsp212G12GggCggT14B.1.5960.000087
ORF1ab/nsp212G12GggCggT33AY.260.000085
ORF1ab/nsp212G12GggCggT33AY.290.000047
ORF1ab/nsp212G12GggCggA23AY.420.00008
ORF1ab/nsp212G12GggCggT13AY.420.00004
ORF1ab/nsp212G12GggCggT23AY.690.000373
ORF1ab/nsp212G12GggCggA13AY.690.000187
ORF1ab/nsp212G12GggCggT33AY.950.002283
ORF1ab/nsp212G12GggCggA23AY.98.10.000097
ORF1ab/nsp212G12GggCggT13AY.98.10.000048
ORF1ab/nsp212G12GggCggA33B.1.1.250.001706
ORF1ab/nsp212G12GggCggT23B.1.1.5190.000079
ORF1ab/nsp212G12GggCggA13B.1.1.5190.00004
ORF1ab/nsp212G12GggCggA33B.1.617.10.000387
ORF1ab/nsp212G12GggCggT23B.1.6180.008065
ORF1ab/nsp212G12GggCggA13B.1.6180.004032
ORF1ab/nsp212G12GggCggT12A.270.001656
ORF1ab/nsp212G12GggCggA12A.270.001656
ORF1ab/nsp212G12GggCggT22AY.1170.000169
ORF1ab/nsp212G12GggCggT22AY.39.10.000079
ORF1ab/nsp212G12GggCggA22AY.46.50.000397
ORF1ab/nsp212G12GggCggT22AY.470.000062
ORF1ab/nsp212G12GggCggA12AY.60.000041
ORF1ab/nsp212G12GggCggT12AY.60.000041
ORF1ab/nsp212G12GggCggT22AY.610.00021
ORF1ab/nsp212G12GggCggT22AY.820.002714
ORF1ab/nsp212G12GggCggT22AY.840.000875
ORF1ab/nsp212G12GggCggA22AY.900.001369
ORF1ab/nsp212G12GggCggA22B0.000256
ORF1ab/nsp212G12GggCggT12B.1.1.2200.001859
ORF1ab/nsp212G12GggCggA12B.1.1.2200.001859
ORF1ab/nsp212G12GggCggT22B.1.1.3110.000716
ORF1ab/nsp212G12GggCggA22B.1.1.4090.005666
ORF1ab/nsp212G12GggCggA12B.1.1110.001175
ORF1ab/nsp212G12GggCggT12B.1.1110.001175
ORF1ab/nsp212G12GggCggT22B.1.160.230.009662
ORF1ab/nsp212G12GggCggT22B.1.1670.015625
ORF1ab/nsp212G12GggCggT22B.1.177.530.004785
ORF1ab/nsp212G12GggCggT22B.1.177.810.000379
ORF1ab/nsp212G12GggCggA12B.1.2430.00007
ORF1ab/nsp212G12GggCggT12B.1.2430.00007
ORF1ab/nsp212G12GggCggA22B.1.351.30.001753
ORF1ab/nsp212G12GggCggT12B.1.360.000146
ORF1ab/nsp212G12GggCggA12B.1.360.000146
ORF1ab/nsp212G12GggCggT22B.1.4290.000047
ORF1ab/nsp212G12GggCggT22B.1.466.20.000782
ORF1ab/nsp212G12GggCggA12C.360.000911
ORF1ab/nsp212G12GggCggT12C.360.000911
ORF1ab/nsp212G12GggCggT22P.1.170.000324
ORF1ab/nsp212G12GggCggT22R.10.00018
ORF1ab/nsp212G12GggCggT110.055556
ORF1ab/nsp212G12GggCggT11A.10.000282
ORF1ab/nsp212G12GggCggA11A.290.005319
ORF1ab/nsp212G12GggCggT11AE.10.011364
ORF1ab/nsp212G12GggCggA11AT.10.005128
ORF1ab/nsp212G12GggCggT11AU.30.00211
ORF1ab/nsp212G12GggCggT11AY.1160.000287
ORF1ab/nsp212G12GggCggA11AY.120.000316
ORF1ab/nsp212G12GggCggT11AY.120.10.000321
ORF1ab/nsp212G12GggCggT11AY.230.00007
ORF1ab/nsp212G12GggCggT11AY.270.000065
ORF1ab/nsp212G12GggCggT11AY.340.000097
ORF1ab/nsp212G12GggCggT11AY.46.40.000165
ORF1ab/nsp212G12GggCggA11AY.580.000907
ORF1ab/nsp212G12GggCggT11AY.630.000387
ORF1ab/nsp212G12GggCggT11AY.650.000533
ORF1ab/nsp212G12GggCggA11AY.70.000196
ORF1ab/nsp212G12GggCggT11AY.700.000209
ORF1ab/nsp212G12GggCggT11AY.75.10.00018
ORF1ab/nsp212G12GggCggA11AY.760.004831
ORF1ab/nsp212G12GggCggT11AY.920.000287
ORF1ab/nsp212G12GggCggA11AY.940.000443
ORF1ab/nsp212G12GggCggT11AY.980.000079
ORF1ab/nsp212G12GggCggA11AY.99.20.000092
ORF1ab/nsp212G12GggCggA11B.1.1.2740.005051
ORF1ab/nsp212G12GggCggT11B.1.1.280.000311
ORF1ab/nsp212G12GggCggA11B.1.1.3070.002532
ORF1ab/nsp212G12GggCggA11B.1.1.3090.005848
ORF1ab/nsp212G12GggCggA11B.1.1.3180.000302
ORF1ab/nsp212G12GggCggT11B.1.1.4160.000905
ORF1ab/nsp212G12GggCggA11B.1.1.4190.007407
ORF1ab/nsp212G12GggCggT11B.1.1.500.000679
ORF1ab/nsp212G12GggCggA11B.1.1.920.033333
ORF1ab/nsp212G12GggCggT11B.1.130.002375
ORF1ab/nsp212G12GggCggT11B.1.1600.000031
ORF1ab/nsp212G12GggCggT11B.1.160.140.002119
ORF1ab/nsp212G12GggCggT11B.1.160.160.000929
ORF1ab/nsp212G12GggCggT11B.1.160.260.002421
ORF1ab/nsp212G12GggCggA11B.1.177.100.000878
ORF1ab/nsp212G12GggCggA11B.1.177.160.000664
ORF1ab/nsp212G12GggCggT11B.1.177.570.000281
ORF1ab/nsp212G12GggCggA11B.1.177.870.000728
ORF1ab/nsp212G12GggCggA11B.1.2210.000071
ORF1ab/nsp212G12GggCggT11B.1.221.20.004016
ORF1ab/nsp212G12GggCggA11B.1.2230.002778
ORF1ab/nsp212G12GggCggT11B.1.2340.000132
ORF1ab/nsp212G12GggCggA11B.1.2600.003344
ORF1ab/nsp212G12GggCggA11B.1.2650.001271
ORF1ab/nsp212G12GggCggA11B.1.351.20.000303
ORF1ab/nsp212G12GggCggT11B.1.3560.001727
ORF1ab/nsp212G12GggCggA11B.1.36.80.001
ORF1ab/nsp212G12GggCggT11B.1.3750.00082
ORF1ab/nsp212G12GggCggT11B.1.3960.000706
ORF1ab/nsp212G12GggCggA11B.1.400.019608
ORF1ab/nsp212G12GggCggT11B.1.4270.00005
ORF1ab/nsp212G12GggCggT11B.1.438.10.000107
ORF1ab/nsp212G12GggCggA11B.1.5170.000427
ORF1ab/nsp212G12GggCggA11B.1.517.10.005263
ORF1ab/nsp212G12GggCggT11B.1.5750.000303
ORF1ab/nsp212G12GggCggT11B.1.5880.00091
ORF1ab/nsp212G12GggCggT11B.1.5990.00365
ORF1ab/nsp212G12GggCggA11B.1.6090.000479
ORF1ab/nsp212G12GggCggT11B.1.6190.000871
ORF1ab/nsp212G12GggCggA11B.1.6370.000073
ORF1ab/nsp212G12GggCggA11B.1.930.000934
ORF1ab/nsp212G12GggCggA11B.310.003731
ORF1ab/nsp212G12GggCggA11B.400.000364
ORF1ab/nsp212G12GggCggT11B.60.00091
ORF1ab/nsp212G12GggCggT11D.30.005917
ORF1ab/nsp212G12GggCggA11P.1.10.000318
ORF1ab/nsp212G12GggCggT11P.1.100.000269
ORF1ab/nsp212G12GggCggT11P.1.140.000048
ORF1ab/nsp212G12GggCggT11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.