CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = F505S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2505F505SF685SnonsyntTttCt6926880.994222318-2320
ORF1ab/nsp2505F505SF685SnonsyntTTtCC69220.002890172318-2320
ORF1ab/nsp2505F505SF685SnonsynTTTAGC69210.001445092318-2320
ORF1ab/nsp2505F505SF685SnonsynTTtAGt69210.001445092318-2320

Details of the mutation F505S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2505F505StTttCt688692All0.000132
ORF1ab/nsp2505F505StTTtCC2692All0
ORF1ab/nsp2505F505STTTAGC1692All0
ORF1ab/nsp2505F505STTtAGt1692All0
ORF1ab/nsp2505F505StTttCt436436B.1.36.390.966741
ORF1ab/nsp2505F505StTttCt193193AY.39.10.007645
ORF1ab/nsp2505F505StTttCt1010B.1.36.170.004941
ORF1ab/nsp2505F505StTttCt77AY.260.000198
ORF1ab/nsp2505F505StTttCt66B.1.10.000109
ORF1ab/nsp2505F505StTttCt55AY.40.000008
ORF1ab/nsp2505F505StTttCt55B.10.000046
ORF1ab/nsp2505F505StTttCt55B.1.617.20.000019
ORF1ab/nsp2505F505StTttCt44B.1.1.70.000004
ORF1ab/nsp2505F505StTttCt44B.1.1770.000053
ORF1ab/nsp2505F505StTttCt44B.1.2580.000266
ORF1ab/nsp2505F505StTttCt44B.1.5510.005161
ORF1ab/nsp2505F505STTtAGt12AY.1130.000142
ORF1ab/nsp2505F505STTTAGC12AY.1130.000142
ORF1ab/nsp2505F505StTttCt12AY.520.000814
ORF1ab/nsp2505F505StTTtCC12AY.520.000814
ORF1ab/nsp2505F505StTttCt11AY.370.000316
ORF1ab/nsp2505F505StTttCt11AY.430.000004
ORF1ab/nsp2505F505StTTtCC11AY.46.60.000072
ORF1ab/nsp2505F505StTttCt11AY.610.000105
ORF1ab/nsp2505F505StTttCt11B.1.2600.003344