CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = F499del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2499F499del1F679del1delTtt-tt12110.9166672300-2302
ORF1ab/nsp2499F499del1F679del1delttTtt-1210.08333332300-2302

Details of the mutation F499del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2499F499del1Ttt-tt1112All0.000002
ORF1ab/nsp2499F499del1ttTtt-112All0
ORF1ab/nsp2499F499del1Ttt-tt33AY.440.000018
ORF1ab/nsp2499F499del1Ttt-tt22B.1.617.20.000008
ORF1ab/nsp2499F499del1Ttt-tt11AY.430.000004
ORF1ab/nsp2499F499del1Ttt-tt11AY.540.000095
ORF1ab/nsp2499F499del1ttTtt-11B0.000128
ORF1ab/nsp2499F499del1Ttt-tt11B.10.000009
ORF1ab/nsp2499F499del1Ttt-tt11B.1.10.000018
ORF1ab/nsp2499F499del1Ttt-tt11B.1.1.70.000001
ORF1ab/nsp2499F499del1Ttt-tt11B.1.5960.000087