CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = F499S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2499F499SF679SnonsyntTttCt73700.9589042300-2302
ORF1ab/nsp2499F499SF679SnonsyntTTtCC7320.02739732300-2302
ORF1ab/nsp2499F499SF679SnonsyntTTtCA7310.01369862300-2302

Details of the mutation F499S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2499F499StTttCt7073All0.000013
ORF1ab/nsp2499F499StTTtCC273All0
ORF1ab/nsp2499F499StTTtCA173All0
ORF1ab/nsp2499F499StTttCt2223B.1.1.70.00002
ORF1ab/nsp2499F499StTTtCC123B.1.1.70.000001
ORF1ab/nsp2499F499StTttCt99AY.40.000014
ORF1ab/nsp2499F499StTttCt55B.10.000046
ORF1ab/nsp2499F499StTttCt44AY.430.000018
ORF1ab/nsp2499F499StTttCt44B.1.20.000035
ORF1ab/nsp2499F499StTttCt44B.1.5610.001588
ORF1ab/nsp2499F499StTttCt44B.1.5960.000349
ORF1ab/nsp2499F499StTttCt22AY.440.000012
ORF1ab/nsp2499F499StTTtCA12AY.46.60.000072
ORF1ab/nsp2499F499StTTtCC12AY.46.60.000072
ORF1ab/nsp2499F499StTttCt22AY.60.000082
ORF1ab/nsp2499F499StTttCt22AY.620.000871
ORF1ab/nsp2499F499StTttCt22B.1.617.20.000008
ORF1ab/nsp2499F499StTttCt11AY.1030.000006
ORF1ab/nsp2499F499StTttCt11AY.1210.000135
ORF1ab/nsp2499F499StTttCt11AY.200.000039
ORF1ab/nsp2499F499StTttCt11AY.250.000006
ORF1ab/nsp2499F499StTttCt11AY.770.001127
ORF1ab/nsp2499F499StTttCt11B.1.1.5190.00004
ORF1ab/nsp2499F499StTttCt11B.1.177.440.000519
ORF1ab/nsp2499F499StTttCt11B.1.177.650.000665
ORF1ab/nsp2499F499StTttCt11B.1.36.180.00042
ORF1ab/nsp2499F499StTttCt11P.1.150.000232