CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 437 | F437L | F617L | nonsyn | ttT | ttA | 927 | 797 | 0.859763 | 2114-2116 |
ORF1ab/nsp2 | 437 | F437L | F617L | nonsyn | Ttt | Ctt | 927 | 115 | 0.124056 | 2114-2116 |
ORF1ab/nsp2 | 437 | F437L | F617L | nonsyn | ttT | ttG | 927 | 15 | 0.0161812 | 2114-2116 |
Details of the mutation F437L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 797 | 927 | All | 0.000152 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 115 | 927 | All | 0.000022 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttG | 15 | 927 | All | 0.000003 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 486 | 486 | AY.73 | 0.323353 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 78 | 78 | AY.102 | 0.002068 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 64 | 64 | AY.90 | 0.043806 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 26 | 44 | B.1.1.7 | 0.000023 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 15 | 44 | B.1.1.7 | 0.000013 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttG | 3 | 44 | B.1.1.7 | 0.000003 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 38 | 44 | B.1.617.2 | 0.000143 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 4 | 44 | B.1.617.2 | 0.000015 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttG | 2 | 44 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 11 | 21 | AY.44 | 0.000067 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 10 | 21 | AY.44 | 0.000061 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 21 | 21 | B.51 | 1 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 13 | 17 | AY.103 | 0.000081 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 3 | 17 | AY.103 | 0.000019 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttG | 1 | 17 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 6 | 12 | AY.43 | 0.000027 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 6 | 12 | AY.43 | 0.000027 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 8 | 10 | AY.120 | 0.000297 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 2 | 10 | AY.120 | 0.000074 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 9 | 10 | B.1 | 0.000082 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttG | 1 | 10 | B.1 | 0.000009 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 8 | 8 | AY.46.4 | 0.001316 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 4 | 6 | AY.3 | 0.00004 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 2 | 6 | AY.3 | 0.00002 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 4 | 6 | AY.4 | 0.000006 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 1 | 6 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttG | 1 | 6 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 5 | 6 | AY.46 | 0.00052 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 1 | 6 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttG | 3 | 5 | B.1.1 | 0.000054 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 2 | 5 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 4 | 4 | B.1.1.241 | 0.008282 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 3 | 3 | B.1.1.153 | 0.003286 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 3 | 3 | B.1.1.26 | 0.015707 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 2 | 3 | B.1.526 | 0.000047 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 1 | 3 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 1 | 2 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 1 | 2 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 1 | 2 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 1 | 2 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttG | 2 | 2 | P.1.13 | 0.001797 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 1 | 1 | B.1.1.123 | 0.017857 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttG | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 1 | 1 | B.1.13 | 0.002375 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 1 | 1 | B.1.160.9 | 0.007194 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttG | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 437 | F437L | ttT | ttA | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp2 | 437 | F437L | Ttt | Ctt | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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