CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = F356L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2356F356LF536LnonsynTttCtt252421540.8534071871-1873
ORF1ab/nsp2356F356LF536LnonsynttTttA25243350.1327261871-1873
ORF1ab/nsp2356F356LF536LnonsynttTttG2524350.01386691871-1873

Details of the mutation F356L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2356F356LTttCtt21542524All0.000412
ORF1ab/nsp2356F356LttTttA3352524All0.000064
ORF1ab/nsp2356F356LttTttG352524All0.000007
ORF1ab/nsp2356F356LTttCtt11061106AY.910.807889
ORF1ab/nsp2356F356LTttCtt574578AY.40.000893
ORF1ab/nsp2356F356LttTttG3578AY.40.000005
ORF1ab/nsp2356F356LttTttA1578AY.40.000002
ORF1ab/nsp2356F356LttTttA288288AY.750.016134
ORF1ab/nsp2356F356LTttCtt243243AY.91.10.987805
ORF1ab/nsp2356F356LTttCtt3341B.1.617.20.000124
ORF1ab/nsp2356F356LttTttG441B.1.617.20.000015
ORF1ab/nsp2356F356LttTttA441B.1.617.20.000015
ORF1ab/nsp2356F356LTttCtt3235B.1.1.70.000029
ORF1ab/nsp2356F356LttTttA335B.1.1.70.000003
ORF1ab/nsp2356F356LTttCtt2222AY.1020.000583
ORF1ab/nsp2356F356LTttCtt2020AY.390.000494
ORF1ab/nsp2356F356LttTttA613AY.1030.000037
ORF1ab/nsp2356F356LTttCtt413AY.1030.000025
ORF1ab/nsp2356F356LttTttG313AY.1030.000019
ORF1ab/nsp2356F356LttTttA1113B.1.6090.005273
ORF1ab/nsp2356F356LttTttG213B.1.6090.000959
ORF1ab/nsp2356F356LttTttA1012B.1.10.000181
ORF1ab/nsp2356F356LTttCtt212B.1.10.000036
ORF1ab/nsp2356F356LTttCtt1111B.1.1.2140.00061
ORF1ab/nsp2356F356LTttCtt1111B.1.2580.000732
ORF1ab/nsp2356F356LttTttA99R.10.00081
ORF1ab/nsp2356F356LTttCtt88AY.5.30.002699
ORF1ab/nsp2356F356LTttCtt77AY.50.000145
ORF1ab/nsp2356F356LttTttG47B.10.000037
ORF1ab/nsp2356F356LTttCtt37B.10.000027
ORF1ab/nsp2356F356LttTttG66AY.1210.000812
ORF1ab/nsp2356F356LTttCtt55AY.430.000022
ORF1ab/nsp2356F356LTttCtt45AY.440.000024
ORF1ab/nsp2356F356LttTttA15AY.440.000006
ORF1ab/nsp2356F356LTttCtt55AY.550.004587
ORF1ab/nsp2356F356LTttCtt44AY.30.00004
ORF1ab/nsp2356F356LTttCtt44AY.450.000487
ORF1ab/nsp2356F356LttTttG44B.1.1.2070.004728
ORF1ab/nsp2356F356LTttCtt34P.10.000047
ORF1ab/nsp2356F356LttTttG14P.10.000016
ORF1ab/nsp2356F356LTttCtt33AY.290.000047
ORF1ab/nsp2356F356LTttCtt33AY.420.000121
ORF1ab/nsp2356F356LTttCtt33B.1.2430.000209
ORF1ab/nsp2356F356LttTttG22A0.000774
ORF1ab/nsp2356F356LTttCtt22AY.160.000759
ORF1ab/nsp2356F356LTttCtt22AY.250.000012
ORF1ab/nsp2356F356LTttCtt22AY.4.30.001684
ORF1ab/nsp2356F356LTttCtt22AY.580.001815
ORF1ab/nsp2356F356LTttCtt22AY.610.00021
ORF1ab/nsp2356F356LTttCtt22AY.840.000875
ORF1ab/nsp2356F356LTttCtt22B.1.160.250.022222
ORF1ab/nsp2356F356LTttCtt22B.1.177.160.001329
ORF1ab/nsp2356F356LttTttG12B.1.20.000009
ORF1ab/nsp2356F356LTttCtt12B.1.20.000009
ORF1ab/nsp2356F356LttTttG11AY.10.000396
ORF1ab/nsp2356F356LTttCtt11AY.1000.000046
ORF1ab/nsp2356F356LTttCtt11AY.1050.000643
ORF1ab/nsp2356F356LTttCtt11AY.1180.000063
ORF1ab/nsp2356F356LTttCtt11AY.140.000088
ORF1ab/nsp2356F356LTttCtt11AY.170.008197
ORF1ab/nsp2356F356LTttCtt11AY.39.10.00004
ORF1ab/nsp2356F356LTttCtt11AY.480.000465
ORF1ab/nsp2356F356LttTttA11AY.520.000814
ORF1ab/nsp2356F356LTttCtt11AY.620.000436
ORF1ab/nsp2356F356LTttCtt11AY.75.10.00018
ORF1ab/nsp2356F356LTttCtt11AY.780.001541
ORF1ab/nsp2356F356LTttCtt11AY.850.000427
ORF1ab/nsp2356F356LTttCtt11AY.920.000287
ORF1ab/nsp2356F356LTttCtt11AY.950.000761
ORF1ab/nsp2356F356LTttCtt11AY.960.002075
ORF1ab/nsp2356F356LttTttG11AY.980.000079
ORF1ab/nsp2356F356LttTttG11B.1.1.2220.000204
ORF1ab/nsp2356F356LTttCtt11B.1.1.280.000311
ORF1ab/nsp2356F356LTttCtt11B.1.1.2840.000107
ORF1ab/nsp2356F356LttTttG11B.1.1.4020.011111
ORF1ab/nsp2356F356LTttCtt11B.1.1.4090.002833
ORF1ab/nsp2356F356LTttCtt11B.1.1600.000031
ORF1ab/nsp2356F356LTttCtt11B.1.160.260.002421
ORF1ab/nsp2356F356LTttCtt11B.1.214.20.0006
ORF1ab/nsp2356F356LTttCtt11B.1.2410.000812
ORF1ab/nsp2356F356LTttCtt11B.1.258.170.000104
ORF1ab/nsp2356F356LTttCtt11B.1.3510.00003
ORF1ab/nsp2356F356LTttCtt11B.1.36.170.000494
ORF1ab/nsp2356F356LTttCtt11B.1.4290.000024
ORF1ab/nsp2356F356LTttCtt11B.1.4560.003268
ORF1ab/nsp2356F356LttTttG11B.1.5090.000866
ORF1ab/nsp2356F356LttTttA11B.1.6280.000352
ORF1ab/nsp2356F356LTttCtt11B.60.00091