CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 453 | E453D | E633D | nonsyn | gaG | gaT | 5561 | 5289 | 0.951088 | 2162-2164 |
ORF1ab/nsp2 | 453 | E453D | E633D | nonsyn | gaG | gaC | 5561 | 272 | 0.0489121 | 2162-2164 |
Details of the mutation E453D within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 5289 | 5561 | All | 0.001012 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaC | 272 | 5561 | All | 0.000052 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 2395 | 2395 | AY.39.1 | 0.094874 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 703 | 703 | AY.98.1 | 0.034047 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 456 | 458 | B.1.1.7 | 0.000408 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaC | 2 | 458 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 399 | 402 | AY.4 | 0.000621 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaC | 3 | 402 | AY.4 | 0.000005 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 364 | 365 | AY.44 | 0.002216 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaC | 1 | 365 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaC | 183 | 183 | B.1.237 | 0.910448 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 112 | 112 | AY.103 | 0.000695 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 108 | 108 | AY.43 | 0.000478 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaC | 62 | 89 | B.1 | 0.000568 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 27 | 89 | B.1 | 0.000247 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 71 | 71 | AY.25 | 0.000427 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 70 | 70 | B.1.617.2 | 0.000264 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 40 | 40 | B.1.1.37 | 0.007715 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 28 | 28 | B.1.298 | 0.059197 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 27 | 27 | AY.3 | 0.000269 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 26 | 26 | B.1.36.8 | 0.026 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 26 | 26 | B.1.621 | 0.002301 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 23 | 23 | B.1.2 | 0.000203 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 22 | 22 | AY.27 | 0.001424 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 19 | 19 | B.1.36.16 | 0.027066 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 17 | 17 | AY.106 | 0.005693 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 17 | 17 | B.1.1.130 | 0.261538 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 16 | 16 | AY.120.1 | 0.005136 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 15 | 15 | P.1 | 0.000236 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 13 | 14 | B.1.1 | 0.000236 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaC | 1 | 14 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaC | 10 | 14 | B.1.351 | 0.000297 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 4 | 14 | B.1.351 | 0.000119 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 13 | 13 | AY.102 | 0.000345 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 12 | 12 | AY.4.4 | 0.00491 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 11 | 11 | AY.4.5 | 0.001182 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 10 | 10 | AY.104 | 0.019841 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 9 | 9 | AD.2 | 0.001971 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 9 | 9 | B.1.429 | 0.000212 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 9 | 9 | C.36.3 | 0.005105 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 6 | 8 | AY.26 | 0.00017 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaC | 2 | 8 | AY.26 | 0.000057 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 8 | 8 | AY.33 | 0.000534 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 6 | 6 | AY.118 | 0.000376 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 6 | 6 | AY.2 | 0.002137 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 6 | 6 | AY.42 | 0.000241 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 6 | 6 | B.1.1.317 | 0.00247 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 5 | 6 | B.1.234 | 0.00066 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaC | 1 | 6 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 6 | 6 | B.1.637 | 0.000438 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 5 | 5 | AY.98 | 0.000395 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 5 | 5 | B.1.1.15 | 0.067568 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 5 | 5 | C.35 | 0.00387 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 5 | 5 | Q.8 | 0.000825 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 3 | 4 | AY.45 | 0.000365 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaC | 1 | 4 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 3 | 4 | AY.75 | 0.000168 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaC | 1 | 4 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 4 | 4 | AY.75.1 | 0.000721 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 4 | 4 | B.1.1.269 | 0.005413 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 4 | 4 | B.1.240 | 0.000862 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 3 | 3 | AY.95 | 0.002283 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 3 | 3 | B.1.1.174 | 0.010135 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 2 | 3 | B.1.160 | 0.000062 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaC | 1 | 3 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 3 | 3 | B.1.177.87 | 0.002183 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 3 | 3 | B.1.177.89 | 0.073171 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaC | 1 | 2 | AY.121 | 0.000135 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 2 | AY.121 | 0.000135 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 2 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaC | 1 | 2 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 2 | 2 | B.1.351.3 | 0.001753 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 2 | 2 | B.1.556 | 0.015038 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 2 | 2 | B.1.590 | 0.009091 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 2 | 2 | B.1.597 | 0.009259 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaC | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaC | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | B.1.113 | 0.015625 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | B.1.36.19 | 0.009259 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | B.4.1 | 0.018868 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 453 | E453D | gaG | gaT | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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