CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = D40D

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp240D40DD220DsyngaCgaT535953591923-925

Details of the mutation D40D within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp240D40DgaCgaT53595359All0.001025
ORF1ab/nsp240D40DgaCgaT19181918AY.1010.940657
ORF1ab/nsp240D40DgaCgaT840840B.1.617.20.003163
ORF1ab/nsp240D40DgaCgaT521521AY.430.002308
ORF1ab/nsp240D40DgaCgaT422422B.1.1.70.000378
ORF1ab/nsp240D40DgaCgaT401401AY.40.000624
ORF1ab/nsp240D40DgaCgaT154154AY.1060.051574
ORF1ab/nsp240D40DgaCgaT143143A.23.10.100704
ORF1ab/nsp240D40DgaCgaT129129AY.39.10.00511
ORF1ab/nsp240D40DgaCgaT8888AY.260.002491
ORF1ab/nsp240D40DgaCgaT7373B.1.20.000643
ORF1ab/nsp240D40DgaCgaT5353B.10.000485
ORF1ab/nsp240D40DgaCgaT5151AY.1030.000317
ORF1ab/nsp240D40DgaCgaT3737R.10.00333
ORF1ab/nsp240D40DgaCgaT3232AY.250.000192
ORF1ab/nsp240D40DgaCgaT2929B.1.1770.000382
ORF1ab/nsp240D40DgaCgaT2828P.10.000441
ORF1ab/nsp240D40DgaCgaT2323B.1.5260.000541
ORF1ab/nsp240D40DgaCgaT2020AY.200.000777
ORF1ab/nsp240D40DgaCgaT1919AY.440.000116
ORF1ab/nsp240D40DgaCgaT1717B.1.10.000308
ORF1ab/nsp240D40DgaCgaT1616B.1.5750.004854
ORF1ab/nsp240D40DgaCgaT1515AY.1200.000558
ORF1ab/nsp240D40DgaCgaT1414AY.470.000435
ORF1ab/nsp240D40DgaCgaT1414B.1.1110.016451
ORF1ab/nsp240D40DgaCgaT1313B.1.177.600.00284
ORF1ab/nsp240D40DgaCgaT99B.1.3510.000268
ORF1ab/nsp240D40DgaCgaT88AY.550.007339
ORF1ab/nsp240D40DgaCgaT88B.1.2580.000532
ORF1ab/nsp240D40DgaCgaT88B.1.6090.003835
ORF1ab/nsp240D40DgaCgaT77AY.30.00007
ORF1ab/nsp240D40DgaCgaT77AY.750.000392
ORF1ab/nsp240D40DgaCgaT77B.1.1.3270.7
ORF1ab/nsp240D40DgaCgaT77C.370.000812
ORF1ab/nsp240D40DgaCgaT66AY.330.000401
ORF1ab/nsp240D40DgaCgaT66AY.410.001764
ORF1ab/nsp240D40DgaCgaT66B.1.5960.000523
ORF1ab/nsp240D40DgaCgaT66B.1.6210.000531
ORF1ab/nsp240D40DgaCgaT66P.1.70.001916
ORF1ab/nsp240D40DgaCgaT66Q.80.000989
ORF1ab/nsp240D40DgaCgaT55AY.1170.000423
ORF1ab/nsp240D40DgaCgaT55AY.340.000485
ORF1ab/nsp240D40DgaCgaT55AY.46.60.000361
ORF1ab/nsp240D40DgaCgaT55AY.99.20.000461
ORF1ab/nsp240D40DgaCgaT55B.1.2430.000348
ORF1ab/nsp240D40DgaCgaT55B.1.3970.024272
ORF1ab/nsp240D40DgaCgaT55B.1.5640.002129
ORF1ab/nsp240D40DgaCgaT44AY.1110.000733
ORF1ab/nsp240D40DgaCgaT44AY.420.000161
ORF1ab/nsp240D40DgaCgaT44AY.450.000487
ORF1ab/nsp240D40DgaCgaT44AY.460.000416
ORF1ab/nsp240D40DgaCgaT44AY.60.000165
ORF1ab/nsp240D40DgaCgaT44B.1.4290.000094
ORF1ab/nsp240D40DgaCgaT44B.1.4970.001259
ORF1ab/nsp240D40DgaCgaT33AY.1020.00008
ORF1ab/nsp240D40DgaCgaT33AY.1190.000106
ORF1ab/nsp240D40DgaCgaT33AY.290.000047
ORF1ab/nsp240D40DgaCgaT33B.1.1.1760.001318
ORF1ab/nsp240D40DgaCgaT33B.1.1.250.001706
ORF1ab/nsp240D40DgaCgaT33B.1.351.20.000908
ORF1ab/nsp240D40DgaCgaT33B.1.4000.001287
ORF1ab/nsp240D40DgaCgaT33D.20.000225
ORF1ab/nsp240D40DgaCgaT22AY.1130.000285
ORF1ab/nsp240D40DgaCgaT22AY.3.10.000171
ORF1ab/nsp240D40DgaCgaT22AY.300.000791
ORF1ab/nsp240D40DgaCgaT22AY.320.001065
ORF1ab/nsp240D40DgaCgaT22AY.390.000049
ORF1ab/nsp240D40DgaCgaT22AY.4.20.000043
ORF1ab/nsp240D40DgaCgaT22AY.530.000575
ORF1ab/nsp240D40DgaCgaT22AY.9.20.000073
ORF1ab/nsp240D40DgaCgaT22AY.920.000575
ORF1ab/nsp240D40DgaCgaT22B0.000256
ORF1ab/nsp240D40DgaCgaT22B.1.1.280.000622
ORF1ab/nsp240D40DgaCgaT22B.1.1.4090.005666
ORF1ab/nsp240D40DgaCgaT22B.1.177.150.001262
ORF1ab/nsp240D40DgaCgaT22B.1.258.110.000793
ORF1ab/nsp240D40DgaCgaT22B.1.258.170.000208
ORF1ab/nsp240D40DgaCgaT22B.1.3020.026667
ORF1ab/nsp240D40DgaCgaT22B.1.360.000292
ORF1ab/nsp240D40DgaCgaT22B.1.4270.000101
ORF1ab/nsp240D40DgaCgaT22B.1.617.10.000258
ORF1ab/nsp240D40DgaCgaT22B.1.6280.000705
ORF1ab/nsp240D40DgaCgaT11A.10.000282
ORF1ab/nsp240D40DgaCgaT11A.2.50.000499
ORF1ab/nsp240D40DgaCgaT11AD.20.000219
ORF1ab/nsp240D40DgaCgaT11AE.80.000489
ORF1ab/nsp240D40DgaCgaT11AY.1080.001103
ORF1ab/nsp240D40DgaCgaT11AY.1160.000287
ORF1ab/nsp240D40DgaCgaT11AY.116.10.000311
ORF1ab/nsp240D40DgaCgaT11AY.1180.000063
ORF1ab/nsp240D40DgaCgaT11AY.230.00007
ORF1ab/nsp240D40DgaCgaT11AY.360.000148
ORF1ab/nsp240D40DgaCgaT11AY.4.2.10.000149
ORF1ab/nsp240D40DgaCgaT11AY.4.50.000107
ORF1ab/nsp240D40DgaCgaT11AY.46.40.000165
ORF1ab/nsp240D40DgaCgaT11AY.46.50.000198
ORF1ab/nsp240D40DgaCgaT11AY.50.000021
ORF1ab/nsp240D40DgaCgaT11AY.5.30.000337
ORF1ab/nsp240D40DgaCgaT11AY.680.000274
ORF1ab/nsp240D40DgaCgaT11AY.70.000196
ORF1ab/nsp240D40DgaCgaT11AY.9.10.000084
ORF1ab/nsp240D40DgaCgaT11AY.960.002075
ORF1ab/nsp240D40DgaCgaT11AZ.20.000821
ORF1ab/nsp240D40DgaCgaT11B.1.1.100.001115
ORF1ab/nsp240D40DgaCgaT11B.1.1.3540.004386
ORF1ab/nsp240D40DgaCgaT11B.1.1.3780.007299
ORF1ab/nsp240D40DgaCgaT11B.1.1.4200.001006
ORF1ab/nsp240D40DgaCgaT11B.1.1.5190.00004
ORF1ab/nsp240D40DgaCgaT11B.1.1.5260.003546
ORF1ab/nsp240D40DgaCgaT11B.1.1.630.000386
ORF1ab/nsp240D40DgaCgaT11B.1.1390.000733
ORF1ab/nsp240D40DgaCgaT11B.1.1600.000031
ORF1ab/nsp240D40DgaCgaT11B.1.177.440.000519
ORF1ab/nsp240D40DgaCgaT11B.1.177.570.000281
ORF1ab/nsp240D40DgaCgaT11B.1.177.580.001332
ORF1ab/nsp240D40DgaCgaT11B.1.177.830.001481
ORF1ab/nsp240D40DgaCgaT11B.1.221.10.002907
ORF1ab/nsp240D40DgaCgaT11B.1.2340.000132
ORF1ab/nsp240D40DgaCgaT11B.1.2400.000216
ORF1ab/nsp240D40DgaCgaT11B.1.2650.001271
ORF1ab/nsp240D40DgaCgaT11B.1.3050.002151
ORF1ab/nsp240D40DgaCgaT11B.1.3240.001605
ORF1ab/nsp240D40DgaCgaT11B.1.3380.008621
ORF1ab/nsp240D40DgaCgaT11B.1.36.100.004785
ORF1ab/nsp240D40DgaCgaT11B.1.36.190.009259
ORF1ab/nsp240D40DgaCgaT11B.1.36.310.001751
ORF1ab/nsp240D40DgaCgaT11B.1.3960.000706
ORF1ab/nsp240D40DgaCgaT11B.1.4220.000812
ORF1ab/nsp240D40DgaCgaT11B.1.466.20.000391
ORF1ab/nsp240D40DgaCgaT11B.1.5050.004386
ORF1ab/nsp240D40DgaCgaT11B.1.5160.001957
ORF1ab/nsp240D40DgaCgaT11B.1.5170.000427
ORF1ab/nsp240D40DgaCgaT11B.1.5600.00463
ORF1ab/nsp240D40DgaCgaT11B.1.5610.000397
ORF1ab/nsp240D40DgaCgaT11B.1.5800.004065
ORF1ab/nsp240D40DgaCgaT11B.1.5950.000261
ORF1ab/nsp240D40DgaCgaT11B.1.6370.000073
ORF1ab/nsp240D40DgaCgaT11B.60.00091
ORF1ab/nsp240D40DgaCgaT11C.10.002392
ORF1ab/nsp240D40DgaCgaT11C.120.007194
ORF1ab/nsp240D40DgaCgaT11P.1.100.000269
ORF1ab/nsp240D40DgaCgaT11P.1.140.000048
ORF1ab/nsp240D40DgaCgaT11P.1.150.000232
ORF1ab/nsp240D40DgaCgaT11P.1.170.000162
ORF1ab/nsp240D40DgaCgaT11P.30.001595
ORF1ab/nsp240D40DgaCgaT11Q.10.000126
ORF1ab/nsp240D40DgaCgaT11Q.30.000145