CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = D268del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2268D268delD448deldelGAC---2740274011607-1609

Details of the mutation D268del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2268D268delGAC---27402740All0.000524
ORF1ab/nsp2268D268delGAC---646646B0.082566
ORF1ab/nsp2268D268delGAC---312312B.230.912281
ORF1ab/nsp2268D268delGAC---257257B.450.984674
ORF1ab/nsp2268D268delGAC---228228B.550.672566
ORF1ab/nsp2268D268delGAC---176176B.110.902564
ORF1ab/nsp2268D268delGAC---128128C.230.744186
ORF1ab/nsp2268D268delGAC---117117B.100.966942
ORF1ab/nsp2268D268delGAC---8888B.520.888889
ORF1ab/nsp2268D268delGAC---6767B.1.617.20.000252
ORF1ab/nsp2268D268delGAC---6060P.1.10.01906
ORF1ab/nsp2268D268delGAC---5858B.270.892308
ORF1ab/nsp2268D268delGAC---5656B.570.848485
ORF1ab/nsp2268D268delGAC---5555B.150.964912
ORF1ab/nsp2268D268delGAC---4646B.1.177.860.008439
ORF1ab/nsp2268D268delGAC---4343B.10.000394
ORF1ab/nsp2268D268delGAC---4343B.260.632353
ORF1ab/nsp2268D268delGAC---3838B.1.10.000689
ORF1ab/nsp2268D268delGAC---3838B.470.77551
ORF1ab/nsp2268D268delGAC---3333B.1.1.70.00003
ORF1ab/nsp2268D268delGAC---2929AY.980.002291
ORF1ab/nsp2268D268delGAC---2020B.491
ORF1ab/nsp2268D268delGAC---2020P.10.000315
ORF1ab/nsp2268D268delGAC---1111B.1.20.000097
ORF1ab/nsp2268D268delGAC---1010AY.30.000099
ORF1ab/nsp2268D268delGAC---1010AY.40.000016
ORF1ab/nsp2268D268delGAC---99AY.440.000055
ORF1ab/nsp2268D268delGAC---88AY.200.000311
ORF1ab/nsp2268D268delGAC---88B.1.1.10.002614
ORF1ab/nsp2268D268delGAC---88C.370.000929
ORF1ab/nsp2268D268delGAC---77B.1.2580.000466
ORF1ab/nsp2268D268delGAC---66B.1.1.4340.002091
ORF1ab/nsp2268D268delGAC---55AY.1030.000031
ORF1ab/nsp2268D268delGAC---55AY.260.000142
ORF1ab/nsp2268D268delGAC---44AY.9.20.000147
ORF1ab/nsp2268D268delGAC---44B.1.1.330.001684
ORF1ab/nsp2268D268delGAC---33AY.1100.000338
ORF1ab/nsp2268D268delGAC---33AY.390.000074
ORF1ab/nsp2268D268delGAC---33B.1.1.3480.002389
ORF1ab/nsp2268D268delGAC---33B.1.2840.039474
ORF1ab/nsp2268D268delGAC---22AY.290.000032
ORF1ab/nsp2268D268delGAC---22AY.540.000191
ORF1ab/nsp2268D268delGAC---22AY.850.000854
ORF1ab/nsp2268D268delGAC---22AY.90.000135
ORF1ab/nsp2268D268delGAC---22B.1.1.280.000622
ORF1ab/nsp2268D268delGAC---22B.1.1.370.000386
ORF1ab/nsp2268D268delGAC---22B.1.1.5210.010695
ORF1ab/nsp2268D268delGAC---22B.1.1.630.000772
ORF1ab/nsp2268D268delGAC---22B.1.177.810.000379
ORF1ab/nsp2268D268delGAC---22B.1.2210.000142
ORF1ab/nsp2268D268delGAC---22B.1.5950.000522
ORF1ab/nsp2268D268delGAC---22B.40.004415
ORF1ab/nsp2268D268delGAC---22D.20.00015
ORF1ab/nsp2268D268delGAC---22N.60.014184
ORF1ab/nsp2268D268delGAC---22P.20.000373
ORF1ab/nsp2268D268delGAC---11A0.000387
ORF1ab/nsp2268D268delGAC---11A.2.30.004739
ORF1ab/nsp2268D268delGAC---11A.50.001923
ORF1ab/nsp2268D268delGAC---11AY.130.000161
ORF1ab/nsp2268D268delGAC---11AY.20.000356
ORF1ab/nsp2268D268delGAC---11AY.240.000431
ORF1ab/nsp2268D268delGAC---11AY.250.000006
ORF1ab/nsp2268D268delGAC---11AY.340.000097
ORF1ab/nsp2268D268delGAC---11AY.360.000148
ORF1ab/nsp2268D268delGAC---11AY.39.10.00004
ORF1ab/nsp2268D268delGAC---11AY.4.20.000022
ORF1ab/nsp2268D268delGAC---11AY.4.50.000107
ORF1ab/nsp2268D268delGAC---11AY.450.000122
ORF1ab/nsp2268D268delGAC---11AY.60.000041
ORF1ab/nsp2268D268delGAC---11AY.600.000938
ORF1ab/nsp2268D268delGAC---11AY.650.000533
ORF1ab/nsp2268D268delGAC---11AY.690.000187
ORF1ab/nsp2268D268delGAC---11AY.700.000209
ORF1ab/nsp2268D268delGAC---11AY.750.000056
ORF1ab/nsp2268D268delGAC---11B.1.1.2200.001859
ORF1ab/nsp2268D268delGAC---11B.1.1.2840.000107
ORF1ab/nsp2268D268delGAC---11B.1.1.2940.001266
ORF1ab/nsp2268D268delGAC---11B.1.1.3750.011905
ORF1ab/nsp2268D268delGAC---11B.1.1110.001175
ORF1ab/nsp2268D268delGAC---11B.1.1570.002985
ORF1ab/nsp2268D268delGAC---11B.1.1770.000013
ORF1ab/nsp2268D268delGAC---11B.1.177.120.000152
ORF1ab/nsp2268D268delGAC---11B.1.177.870.000728
ORF1ab/nsp2268D268delGAC---11B.1.214.20.0006
ORF1ab/nsp2268D268delGAC---11B.1.2400.000216
ORF1ab/nsp2268D268delGAC---11B.1.2430.00007
ORF1ab/nsp2268D268delGAC---11B.1.3510.00003
ORF1ab/nsp2268D268delGAC---11B.1.360.000146
ORF1ab/nsp2268D268delGAC---11B.1.36.80.001
ORF1ab/nsp2268D268delGAC---11B.1.4500.011364
ORF1ab/nsp2268D268delGAC---11B.1.4710.002732
ORF1ab/nsp2268D268delGAC---11B.1.5960.000087
ORF1ab/nsp2268D268delGAC---11B.1.6210.000089
ORF1ab/nsp2268D268delGAC---11B.1.930.000934
ORF1ab/nsp2268D268delGAC---11B.50.038462
ORF1ab/nsp2268D268delGAC---11C.10.002392
ORF1ab/nsp2268D268delGAC---11P.1.150.000232
ORF1ab/nsp2268D268delGAC---11Q.10.000126
ORF1ab/nsp2268D268delGAC---11R.10.00009
ORF1ab/nsp2268D268delGAC---11Y.10.012821

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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