CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 23 | D23Y | D203Y | nonsyn | Gac | Tac | 1522 | 1522 | 1 | 872-874 |
Details of the mutation D23Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1522 | 1522 | All | 0.000291 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 506 | 506 | B.1.1.198 | 0.743025 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 253 | 253 | AY.4 | 0.000394 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 213 | 213 | B.1.1.7 | 0.000191 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 89 | 89 | B.1 | 0.000815 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 87 | 87 | AY.5 | 0.001796 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 41 | 41 | P.1 | 0.000646 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 39 | 39 | AY.44 | 0.000237 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 26 | 26 | B.1.617.2 | 0.000098 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 25 | 25 | AY.43 | 0.000111 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 19 | 19 | B.1.429 | 0.000447 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 17 | 17 | B.1.621 | 0.001505 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 13 | 13 | AY.103 | 0.000081 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 12 | 12 | C.37 | 0.001393 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 10 | 10 | AY.3.1 | 0.000853 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 10 | 10 | B.1.2 | 0.000088 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 8 | 8 | B.1.36.38 | 0.013136 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 7 | 7 | AY.20 | 0.000272 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 6 | 6 | B.1.561 | 0.002382 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 6 | 6 | B.1.617.1 | 0.000774 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 5 | 5 | B.1.177.12 | 0.000758 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 5 | 5 | B.1.361 | 0.006443 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 5 | 5 | B.1.558 | 0.022831 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 4 | 4 | AD.2 | 0.000876 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 3 | 3 | B.1.214.2 | 0.001799 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 3 | 3 | B.1.619 | 0.002613 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 2 | 2 | B.1.516 | 0.003914 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | B.1.1.440 | 0.011765 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | B.1.395 | 0.007042 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 23 | D23Y | Gac | Tac | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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