CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = C509S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2509C509SC689SnonsynTgtAgt19100.5263162330-2332
ORF1ab/nsp2509C509SC689SnonsyntGttCt1960.3157892330-2332
ORF1ab/nsp2509C509SC689SnonsyntGTtCC1920.1052632330-2332
ORF1ab/nsp2509C509SC689SnonsyntGTtCG1910.05263162330-2332

Details of the mutation C509S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2509C509STgtAgt1019All0.000002
ORF1ab/nsp2509C509StGttCt619All0.000001
ORF1ab/nsp2509C509StGTtCC219All0
ORF1ab/nsp2509C509StGTtCG119All0
ORF1ab/nsp2509C509StGttCt24B.10.000018
ORF1ab/nsp2509C509STgtAgt24B.10.000018
ORF1ab/nsp2509C509STgtAgt12B.1.1.70.000001
ORF1ab/nsp2509C509StGttCt12B.1.1.70.000001
ORF1ab/nsp2509C509StGTtCC12B.1.617.20.000004
ORF1ab/nsp2509C509STgtAgt12B.1.617.20.000004
ORF1ab/nsp2509C509STgtAgt11A.2.40.003367
ORF1ab/nsp2509C509STgtAgt11AY.1030.000006
ORF1ab/nsp2509C509StGTtCG11AY.1130.000142
ORF1ab/nsp2509C509StGttCt11AY.390.000025
ORF1ab/nsp2509C509STgtAgt11AY.480.000465
ORF1ab/nsp2509C509StGTtCC11AY.750.000056
ORF1ab/nsp2509C509StGttCt11AY.98.10.000048
ORF1ab/nsp2509C509STgtAgt11B.1.177.530.002392
ORF1ab/nsp2509C509StGttCt11B.1.2580.000067
ORF1ab/nsp2509C509STgtAgt11B.1.4040.001302
ORF1ab/nsp2509C509STgtAgt11B.1.4270.00005