CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = C475R

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2475C475RC655RnonsynTgtCgt2492480.9959842228-2230
ORF1ab/nsp2475C475RC655RnonsynTgTCgC24910.004016062228-2230

Details of the mutation C475R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2475C475RTgtCgt248249All0.000047
ORF1ab/nsp2475C475RTgTCgC1249All0
ORF1ab/nsp2475C475RTgtCgt5757B.1.1.4020.633333
ORF1ab/nsp2475C475RTgtCgt3333AY.260.000934
ORF1ab/nsp2475C475RTgtCgt2525AY.40.000039
ORF1ab/nsp2475C475RTgtCgt2425B.1.1.70.000021
ORF1ab/nsp2475C475RTgTCgC125B.1.1.70.000001
ORF1ab/nsp2475C475RTgtCgt1818B.1.20.000158
ORF1ab/nsp2475C475RTgtCgt1616AY.250.000096
ORF1ab/nsp2475C475RTgtCgt1313AY.460.001353
ORF1ab/nsp2475C475RTgtCgt88B.10.000073
ORF1ab/nsp2475C475RTgtCgt66AY.440.000037
ORF1ab/nsp2475C475RTgtCgt66B.1.10.000109
ORF1ab/nsp2475C475RTgtCgt55AY.630.001934
ORF1ab/nsp2475C475RTgtCgt55B.1.5260.000118
ORF1ab/nsp2475C475RTgtCgt55B.1.617.20.000019
ORF1ab/nsp2475C475RTgtCgt44AY.330.000267
ORF1ab/nsp2475C475RTgtCgt33AY.1090.002219
ORF1ab/nsp2475C475RTgtCgt33AY.390.000074
ORF1ab/nsp2475C475RTgtCgt33B.1.3510.000089
ORF1ab/nsp2475C475RTgtCgt22AY.1020.000053
ORF1ab/nsp2475C475RTgtCgt11A.2.20.001689
ORF1ab/nsp2475C475RTgtCgt11AY.1030.000006
ORF1ab/nsp2475C475RTgtCgt11AY.130.000161
ORF1ab/nsp2475C475RTgtCgt11AY.200.000039
ORF1ab/nsp2475C475RTgtCgt11AY.420.00004
ORF1ab/nsp2475C475RTgtCgt11AY.430.000004
ORF1ab/nsp2475C475RTgtCgt11B.1.1.2200.001859
ORF1ab/nsp2475C475RTgtCgt11B.1.1.3170.000412
ORF1ab/nsp2475C475RTgtCgt11B.1.1.4160.000905
ORF1ab/nsp2475C475RTgtCgt11B.1.2430.00007
ORF1ab/nsp2475C475RTgtCgt11B.1.36.80.001
ORF1ab/nsp2475C475RTgtCgt11B.1.6090.000479