CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = C177C

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2177C177CC357CsyntgTtgC18818811334-1336

Details of the mutation C177C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2177C177CtgTtgC188188All0.000036
ORF1ab/nsp2177C177CtgTtgC7777B.1.1.70.000069
ORF1ab/nsp2177C177CtgTtgC2727AY.40.000042
ORF1ab/nsp2177C177CtgTtgC2020B.1.1.4200.020121
ORF1ab/nsp2177C177CtgTtgC1111B.1.20.000097
ORF1ab/nsp2177C177CtgTtgC99B.1.4861
ORF1ab/nsp2177C177CtgTtgC88AY.430.000035
ORF1ab/nsp2177C177CtgTtgC66B.1.617.20.000023
ORF1ab/nsp2177C177CtgTtgC44AY.1030.000025
ORF1ab/nsp2177C177CtgTtgC33AY.200.000117
ORF1ab/nsp2177C177CtgTtgC33AY.440.000018
ORF1ab/nsp2177C177CtgTtgC33B.1.1600.000094
ORF1ab/nsp2177C177CtgTtgC22AY.1020.000053
ORF1ab/nsp2177C177CtgTtgC22AY.390.000049
ORF1ab/nsp2177C177CtgTtgC22AY.4.50.000215
ORF1ab/nsp2177C177CtgTtgC11A.2.50.000499
ORF1ab/nsp2177C177CtgTtgC11AY.1130.000142
ORF1ab/nsp2177C177CtgTtgC11AY.460.000104
ORF1ab/nsp2177C177CtgTtgC11B.10.000009
ORF1ab/nsp2177C177CtgTtgC11B.1.1.2140.000055
ORF1ab/nsp2177C177CtgTtgC11B.1.351.50.0006
ORF1ab/nsp2177C177CtgTtgC11B.1.36.380.001642
ORF1ab/nsp2177C177CtgTtgC11B.1.3690.000285
ORF1ab/nsp2177C177CtgTtgC11B.1.5440.006024
ORF1ab/nsp2177C177CtgTtgC11B.1.619.10.000641
ORF1ab/nsp2177C177CtgTtgC11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.