CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 161 | C161C | C341C | syn | tgC | tgT | 12981 | 12981 | 1 | 1286-1288 |
Details of the mutation C161C within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 12981 | 12981 | All | 0.002483 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2251 | 2251 | B.1.1.7 | 0.002015 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1536 | 1536 | AY.4 | 0.002391 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 973 | 973 | AY.44 | 0.005922 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 874 | 874 | B.1 | 0.008005 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 631 | 631 | AZ.1 | 0.547268 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 396 | 396 | B.1.617.2 | 0.001491 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 363 | 363 | B.1.2 | 0.003196 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 304 | 304 | AY.3 | 0.003024 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 292 | 292 | AY.7 | 0.057232 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 261 | 261 | B.1.1 | 0.004735 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 229 | 229 | AY.103 | 0.001422 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 217 | 217 | AY.43 | 0.000961 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 217 | 217 | B.1.558 | 0.990868 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 210 | 210 | P.7 | 0.917031 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 202 | 202 | AY.33 | 0.013489 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 194 | 194 | B.1.88.1 | 0.932692 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 171 | 171 | B.1.243 | 0.011899 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 169 | 169 | B.1.619 | 0.147213 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 156 | 156 | AY.25 | 0.000938 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 143 | 143 | AY.46.6 | 0.010326 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 110 | 110 | AY.5 | 0.002271 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 110 | 110 | AY.90 | 0.075291 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 109 | 109 | P.1 | 0.001717 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 106 | 106 | B.1.177 | 0.001396 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 101 | 101 | B.1.1.251 | 0.801587 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 94 | 94 | B.1.385 | 1 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 84 | 84 | AY.20 | 0.003265 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 79 | 79 | AY.4.2 | 0.001713 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 77 | 77 | AY.26 | 0.00218 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 76 | 76 | B.1.526 | 0.001786 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 66 | 66 | B.1.1.12 | 0.492537 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 61 | 61 | B.1.351.3 | 0.053462 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 60 | 60 | AY.99.2 | 0.005529 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 57 | 57 | AY.29 | 0.000899 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 56 | 56 | AY.53 | 0.016101 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 51 | 51 | B.1.1.176 | 0.022408 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 51 | 51 | B.1.160 | 0.001591 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 50 | 50 | Q.3 | 0.007252 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 48 | 48 | AY.23 | 0.003348 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 47 | 47 | B.1.1.28 | 0.014628 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 39 | 39 | B.1.351 | 0.001159 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 34 | 34 | C.37 | 0.003946 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 33 | 33 | AY.100 | 0.001518 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 33 | 33 | AY.42 | 0.001328 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 33 | 33 | AY.61 | 0.003458 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 31 | 31 | P.1.14 | 0.001482 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 30 | 30 | B.1.399 | 0.058027 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 29 | 29 | AY.39 | 0.000717 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 29 | 29 | C.9 | 0.878788 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 28 | 28 | B.1.427 | 0.001414 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 26 | 26 | B.1.1.214 | 0.001442 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 26 | 26 | B.1.429 | 0.000612 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 26 | 26 | B.1.525 | 0.002942 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 25 | 25 | AY.75 | 0.001401 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 25 | 25 | AY.98.1 | 0.001211 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 24 | 24 | AY.102 | 0.000636 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 24 | 24 | AY.119 | 0.000847 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 24 | 24 | AY.120 | 0.000892 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 24 | 24 | B.1.637 | 0.001754 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 23 | 23 | B.1.36 | 0.003356 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 21 | 21 | AY.47 | 0.000653 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 19 | 19 | AY.101 | 0.009318 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 19 | 19 | AY.118 | 0.00119 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 19 | 19 | B.1.596 | 0.001656 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 17 | 17 | AY.6 | 0.000699 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 16 | 16 | AD.2 | 0.003503 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 16 | 16 | B.1.221 | 0.001137 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 16 | 16 | B.1.258 | 0.001065 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 16 | 16 | B.1.588 | 0.014559 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 15 | 15 | B.1.621 | 0.001328 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 14 | 14 | P.2 | 0.002613 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 14 | 14 | P.6 | 0.044025 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 13 | 13 | A.23.1 | 0.009155 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 13 | 13 | AY.10 | 0.006889 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 13 | 13 | AY.36 | 0.001927 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 13 | 13 | AY.5.4 | 0.003597 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 13 | 13 | B.1.1.39 | 0.006626 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 13 | 13 | B.1.1.519 | 0.000516 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 13 | 13 | B.1.617.1 | 0.001677 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 13 | 13 | Q.8 | 0.002144 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 12 | 12 | B.1.1.175 | 0.923077 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 12 | 12 | B.1.177.86 | 0.002201 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 12 | 12 | B.1.240 | 0.002587 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 12 | 12 | B.1.396 | 0.008469 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 11 | 11 | AY.116 | 0.003155 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 11 | 11 | B.1.1.420 | 0.011066 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 11 | 11 | B.1.369 | 0.003137 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 11 | 11 | Q.1 | 0.00139 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 10 | 10 | A.21 | 0.027701 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 10 | 10 | A.27 | 0.016556 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 10 | 10 | AY.106 | 0.003349 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 10 | 10 | AY.3.1 | 0.000853 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 10 | 10 | B.1.1.284 | 0.001074 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 10 | 10 | B.1.36.17 | 0.004941 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 9 | 9 | AY.13 | 0.001449 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 9 | 9 | AY.39.1 | 0.000357 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 9 | 9 | AY.4.5 | 0.000967 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 9 | 9 | AY.45 | 0.001095 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 9 | 9 | AY.55 | 0.008257 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 9 | 9 | AY.75.1 | 0.001623 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 9 | 9 | B.1.1.306 | 0.003946 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 8 | 8 | AY.117 | 0.000676 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 8 | 8 | AY.46.5 | 0.001587 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 8 | 8 | B.1.1.50 | 0.005431 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 8 | 8 | B.1.587 | 0.01518 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 8 | 8 | P.1.7 | 0.002554 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 7 | 7 | AY.16 | 0.002658 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 7 | 7 | AY.16.1 | 0.003289 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 7 | 7 | AY.30 | 0.00277 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 7 | 7 | AY.9 | 0.000473 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 7 | 7 | AZ.3 | 0.010638 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 7 | 7 | B.1.1.222 | 0.001428 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 7 | 7 | B.1.1.37 | 0.00135 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 7 | 7 | B.1.361 | 0.009021 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 7 | 7 | B.1.409 | 0.005469 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 7 | 7 | B.1.560 | 0.032407 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 6 | 6 | AY.38 | 0.002996 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 6 | 6 | AY.7.2 | 0.003356 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 6 | 6 | B.1.111 | 0.007051 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 6 | 6 | B.1.177.32 | 0.008097 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 6 | 6 | B.1.177.52 | 0.010545 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 6 | 6 | B.1.234 | 0.000792 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 6 | 6 | B.1.258.17 | 0.000624 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 6 | 6 | B.1.397 | 0.029126 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 6 | 6 | B.1.564 | 0.002555 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 6 | 6 | B.1.575 | 0.00182 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 6 | 6 | B.1.595 | 0.001566 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 6 | 6 | D.2 | 0.00045 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 6 | 6 | P.1.12 | 0.002904 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 6 | 6 | P.1.15 | 0.001394 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 5 | 5 | AY.113 | 0.000712 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 5 | 5 | AY.27 | 0.000324 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 5 | 5 | AY.34 | 0.000485 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 5 | 5 | AY.5.3 | 0.001687 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 5 | 5 | AY.69 | 0.000933 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 5 | 5 | AY.79 | 0.006053 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 5 | 5 | AY.9.1 | 0.000419 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 5 | 5 | B.1.1.1 | 0.001633 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 5 | 5 | B.1.1.317 | 0.002058 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 5 | 5 | B.1.1.318 | 0.001509 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 5 | 5 | B.1.466.2 | 0.001956 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 5 | 5 | S.1 | 0.024752 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 4 | 4 | AY.111 | 0.000733 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 4 | 4 | AY.59 | 0.002119 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 4 | 4 | AY.68 | 0.001095 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 4 | 4 | AY.7.1 | 0.000451 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 4 | 4 | AY.93 | 0.001092 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 4 | 4 | B.1.1.141 | 0.008048 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 4 | 4 | B.1.1.277 | 0.003035 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 4 | 4 | B.1.1.372 | 0.002755 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 4 | 4 | B.1.1.376 | 0.02381 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 4 | 4 | B.1.1.63 | 0.001543 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 4 | 4 | B.1.287 | 0.121212 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 4 | 4 | B.1.338 | 0.034483 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 4 | 4 | B.1.577 | 0.002749 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 4 | 4 | B.1.628 | 0.001409 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 3 | 3 | AY.32 | 0.001597 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 3 | 3 | B | 0.000383 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 3 | 3 | B.1.1.144 | 0.085714 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 3 | 3 | B.1.1.288 | 0.005747 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 3 | 3 | B.1.1.294 | 0.003797 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 3 | 3 | B.1.1.326 | 0.005282 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 3 | 3 | B.1.1.432 | 0.003797 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 3 | 3 | B.1.177.44 | 0.001557 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 3 | 3 | B.1.177.57 | 0.000843 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 3 | 3 | B.1.356 | 0.005181 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 3 | 3 | B.1.505 | 0.013158 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 3 | 3 | B.1.523 | 0.007353 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 3 | 3 | B.1.627 | 0.006061 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 3 | 3 | B.6 | 0.00273 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 3 | 3 | C.11 | 0.031915 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 3 | 3 | C.6 | 0.111111 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 3 | 3 | P.1.1 | 0.000953 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | A.28 | 0.005291 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | AY.78 | 0.003082 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | AY.8 | 0.001212 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.1.1.10 | 0.00223 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.1.1.101 | 0.02 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.1.1.189 | 0.003026 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.1.1.354 | 0.008772 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.1.1.398 | 0.006452 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.1.1.507 | 0.017391 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.1.1.67 | 0.009132 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.1.128 | 0.001271 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.1.143 | 0.042553 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.1.160.16 | 0.001859 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.1.160.20 | 0.017857 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.1.160.32 | 0.008584 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.1.167 | 0.015625 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.1.305 | 0.004301 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.1.36.1 | 0.002281 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.1.36.25 | 0.004415 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.1.380 | 0.013245 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.1.416 | 0.002538 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.1.524 | 0.002813 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.1.545 | 0.028986 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.1.575.1 | 0.004878 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.1.576 | 0.001813 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.1.590 | 0.009091 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.1.620 | 0.001892 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | C.30 | 0.003454 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | C.36.1 | 0.008299 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | P.1.2 | 0.002312 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | P.1.4 | 0.001953 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 2 | 2 | P.3 | 0.00319 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | AE.4 | 0.043478 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.1.122 | 0.045455 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.1.258 | 0.003257 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.1.27 | 0.00565 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.1.377 | 0.001381 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.1.385 | 0.004464 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.1.394 | 0.02439 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.1.487 | 0.005587 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.108 | 0.005814 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.115 | 0.021739 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.14 | 0.017544 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.169 | 0.014925 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.199 | 0.004132 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.220 | 0.01087 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.284 | 0.013158 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.315 | 0.006061 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.382 | 0.008929 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.437 | 0.020833 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.559 | 0.025 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.1.94 | 0.027027 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | C.13 | 0.025641 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | C.33 | 0.058824 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | C.39 | 0.018868 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | C.4 | 0.01 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | C.40 | 0.027778 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | C.8 | 0.004464 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | D.3 | 0.005917 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | K.1 | 0.02381 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | K.2 | 0.04 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | L.1 | 0.001905 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp2 | 161 | C161C | tgC | tgT | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|