CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = A80A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp280A80AA260AsyngcAgcT223621610.9664581043-1045
ORF1ab/nsp280A80AA260AsyngcAgcG2236610.02728091043-1045
ORF1ab/nsp280A80AA260AsyngcAgcC2236140.006261181043-1045

Details of the mutation A80A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp280A80AgcAgcT21612236All0.000413
ORF1ab/nsp280A80AgcAgcG612236All0.000012
ORF1ab/nsp280A80AgcAgcC142236All0.000003
ORF1ab/nsp280A80AgcAgcT18181824AY.620.792157
ORF1ab/nsp280A80AgcAgcG61824AY.620.002614
ORF1ab/nsp280A80AgcAgcT201206B.1.617.20.000757
ORF1ab/nsp280A80AgcAgcG3206B.1.617.20.000011
ORF1ab/nsp280A80AgcAgcC2206B.1.617.20.000008
ORF1ab/nsp280A80AgcAgcT7676AY.75.10.013704
ORF1ab/nsp280A80AgcAgcG1423B.1.1.70.000013
ORF1ab/nsp280A80AgcAgcT823B.1.1.70.000007
ORF1ab/nsp280A80AgcAgcC123B.1.1.70.000001
ORF1ab/nsp280A80AgcAgcG714AY.40.000011
ORF1ab/nsp280A80AgcAgcT414AY.40.000006
ORF1ab/nsp280A80AgcAgcC314AY.40.000005
ORF1ab/nsp280A80AgcAgcT79AY.440.000043
ORF1ab/nsp280A80AgcAgcG29AY.440.000012
ORF1ab/nsp280A80AgcAgcT59AY.99.20.000461
ORF1ab/nsp280A80AgcAgcC49AY.99.20.000369
ORF1ab/nsp280A80AgcAgcG35B.10.000027
ORF1ab/nsp280A80AgcAgcT25B.10.000018
ORF1ab/nsp280A80AgcAgcT55B.1.4290.000118
ORF1ab/nsp280A80AgcAgcG55Q.40.002274
ORF1ab/nsp280A80AgcAgcT34AY.250.000018
ORF1ab/nsp280A80AgcAgcG14AY.250.000006
ORF1ab/nsp280A80AgcAgcT34B.1.10.000054
ORF1ab/nsp280A80AgcAgcG14B.1.10.000018
ORF1ab/nsp280A80AgcAgcG44B.1.1600.000125
ORF1ab/nsp280A80AgcAgcT33AD.20.000657
ORF1ab/nsp280A80AgcAgcG23AY.1030.000012
ORF1ab/nsp280A80AgcAgcT13AY.1030.000006
ORF1ab/nsp280A80AgcAgcC33B.1.1.2070.003546
ORF1ab/nsp280A80AgcAgcT22AY.1130.000285
ORF1ab/nsp280A80AgcAgcT22AY.370.000632
ORF1ab/nsp280A80AgcAgcT22AY.380.000999
ORF1ab/nsp280A80AgcAgcT22AY.390.000049
ORF1ab/nsp280A80AgcAgcG22AY.430.000009
ORF1ab/nsp280A80AgcAgcG22B.1.621.10.001012
ORF1ab/nsp280A80AgcAgcT11AY.1000.000046
ORF1ab/nsp280A80AgcAgcT11AY.1170.000085
ORF1ab/nsp280A80AgcAgcC11AY.200.000039
ORF1ab/nsp280A80AgcAgcG11AY.260.000028
ORF1ab/nsp280A80AgcAgcG11AY.330.000067
ORF1ab/nsp280A80AgcAgcT11AY.39.10.00004
ORF1ab/nsp280A80AgcAgcT11AY.540.000095
ORF1ab/nsp280A80AgcAgcT11AY.580.000907
ORF1ab/nsp280A80AgcAgcT11AY.670.000464
ORF1ab/nsp280A80AgcAgcT11AY.730.000665
ORF1ab/nsp280A80AgcAgcT11AY.740.000116
ORF1ab/nsp280A80AgcAgcT11AY.750.000056
ORF1ab/nsp280A80AgcAgcT11AY.840.000437
ORF1ab/nsp280A80AgcAgcG11B0.000128
ORF1ab/nsp280A80AgcAgcT11B.1.1.2610.008621
ORF1ab/nsp280A80AgcAgcT11B.1.1.3720.000689
ORF1ab/nsp280A80AgcAgcG11B.1.1.5190.00004
ORF1ab/nsp280A80AgcAgcT11B.1.1770.000013
ORF1ab/nsp280A80AgcAgcG11B.1.177.70.000165
ORF1ab/nsp280A80AgcAgcG11B.1.2390.001221
ORF1ab/nsp280A80AgcAgcG11B.1.4090.000781
ORF1ab/nsp280A80AgcAgcT11B.1.4110.003704
ORF1ab/nsp280A80AgcAgcT11B.1.5440.006024
ORF1ab/nsp280A80AgcAgcT11B.1.5960.000087
ORF1ab/nsp280A80AgcAgcG11B.1.6210.000089
ORF1ab/nsp280A80AgcAgcT11B.6.60.000889
ORF1ab/nsp280A80AgcAgcG11P.10.000016