CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = A411V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2411A411VA591VnonsyngCtgTt964196400.9998962036-2038
ORF1ab/nsp2411A411VA591VnonsyngCTgTC964110.0001037242036-2038

Details of the mutation A411V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2411A411VgCtgTt96409641All0.001844
ORF1ab/nsp2411A411VgCTgTC19641All0
ORF1ab/nsp2411A411VgCtgTt33993399AY.440.020689
ORF1ab/nsp2411A411VgCtgTt19841984B.1.1.70.001776
ORF1ab/nsp2411A411VgCtgTt679679B.1.617.20.002557
ORF1ab/nsp2411A411VgCtgTt510510AY.40.000794
ORF1ab/nsp2411A411VgCtgTt276276AY.430.001223
ORF1ab/nsp2411A411VgCtgTt208208B.1.1770.002739
ORF1ab/nsp2411A411VgCtgTt194194AV.10.979798
ORF1ab/nsp2411A411VgCtgTt155155B.10.00142
ORF1ab/nsp2411A411VgCtgTt136136B.1.6370.009938
ORF1ab/nsp2411A411VgCtgTt133133AY.1030.000826
ORF1ab/nsp2411A411VgCtgTt115116B.1.20.001013
ORF1ab/nsp2411A411VgCTgTC1116B.1.20.000009
ORF1ab/nsp2411A411VgCtgTt105105B.1.2580.006987
ORF1ab/nsp2411A411VgCtgTt9595AY.610.009954
ORF1ab/nsp2411A411VgCtgTt7373B.1.1.5190.002899
ORF1ab/nsp2411A411VgCtgTt6464AY.250.000385
ORF1ab/nsp2411A411VgCtgTt6161B.1.177.50.075776
ORF1ab/nsp2411A411VgCtgTt5858B.1.10.001052
ORF1ab/nsp2411A411VgCtgTt5757AY.30.000567
ORF1ab/nsp2411A411VgCtgTt5757B.1.3960.040226
ORF1ab/nsp2411A411VgCtgTt5757P.10.000898
ORF1ab/nsp2411A411VgCtgTt5555B.1.1600.001715
ORF1ab/nsp2411A411VgCtgTt4747B.1.2210.003339
ORF1ab/nsp2411A411VgCtgTt4747B.1.3510.001397
ORF1ab/nsp2411A411VgCtgTt4545B.1.177.150.028391
ORF1ab/nsp2411A411VgCtgTt4242AY.5.40.011621
ORF1ab/nsp2411A411VgCtgTt4141B.1.1.4110.602941
ORF1ab/nsp2411A411VgCtgTt3838B.1.5260.000893
ORF1ab/nsp2411A411VgCtgTt3434AY.470.001058
ORF1ab/nsp2411A411VgCtgTt2929AY.9.20.001065
ORF1ab/nsp2411A411VgCtgTt2828B.1.1.3330.03014
ORF1ab/nsp2411A411VgCtgTt2727B.1.360.003939
ORF1ab/nsp2411A411VgCtgTt2525B.1.4290.000588
ORF1ab/nsp2411A411VgCtgTt2323B.1.5960.002004
ORF1ab/nsp2411A411VgCtgTt2222AY.1020.000583
ORF1ab/nsp2411A411VgCtgTt1818AY.20.00641
ORF1ab/nsp2411A411VgCtgTt1818AY.390.000445
ORF1ab/nsp2411A411VgCtgTt1717B.1.3690.004849
ORF1ab/nsp2411A411VgCtgTt1717Q.80.002803
ORF1ab/nsp2411A411VgCtgTt1414AY.370.004425
ORF1ab/nsp2411A411VgCtgTt1414AY.50.000289
ORF1ab/nsp2411A411VgCtgTt1414B.1.2340.001847
ORF1ab/nsp2411A411VgCtgTt1414B.1.4360.014403
ORF1ab/nsp2411A411VgCtgTt1313AY.1000.000598
ORF1ab/nsp2411A411VgCtgTt1313AY.200.000505
ORF1ab/nsp2411A411VgCtgTt1313AY.230.000907
ORF1ab/nsp2411A411VgCtgTt1212AY.540.001144
ORF1ab/nsp2411A411VgCtgTt1212AY.75.10.002164
ORF1ab/nsp2411A411VgCtgTt1212B.1.1390.008798
ORF1ab/nsp2411A411VgCtgTt1212B.1.2320.006448
ORF1ab/nsp2411A411VgCtgTt1111AY.1200.000409
ORF1ab/nsp2411A411VgCtgTt1111B.1.1.4340.003834
ORF1ab/nsp2411A411VgCtgTt1010AY.1060.003349
ORF1ab/nsp2411A411VgCtgTt1010AY.290.000158
ORF1ab/nsp2411A411VgCtgTt99AY.1190.000318
ORF1ab/nsp2411A411VgCtgTt88AY.98.10.000387
ORF1ab/nsp2411A411VgCtgTt88B.1.5950.002088
ORF1ab/nsp2411A411VgCtgTt88B.1.6090.003835
ORF1ab/nsp2411A411VgCtgTt77AY.1170.000592
ORF1ab/nsp2411A411VgCtgTt77AY.120.002212
ORF1ab/nsp2411A411VgCtgTt77AY.510.006364
ORF1ab/nsp2411A411VgCtgTt77B.1.1.1280.049645
ORF1ab/nsp2411A411VgCtgTt77B.1.1.2880.01341
ORF1ab/nsp2411A411VgCtgTt77B.1.4270.000353
ORF1ab/nsp2411A411VgCtgTt77C.370.000812
ORF1ab/nsp2411A411VgCtgTt77P.1.70.002235
ORF1ab/nsp2411A411VgCtgTt66AE.80.002934
ORF1ab/nsp2411A411VgCtgTt66AY.380.002996
ORF1ab/nsp2411A411VgCtgTt66AY.750.000336
ORF1ab/nsp2411A411VgCtgTt66AY.980.000474
ORF1ab/nsp2411A411VgCtgTt66B.1.1.2940.007595
ORF1ab/nsp2411A411VgCtgTt66B.1.1.3170.00247
ORF1ab/nsp2411A411VgCtgTt66B.1.1.700.002046
ORF1ab/nsp2411A411VgCtgTt66B.1.177.600.001311
ORF1ab/nsp2411A411VgCtgTt66Q.10.000758
ORF1ab/nsp2411A411VgCtgTt55AY.1130.000712
ORF1ab/nsp2411A411VgCtgTt55AY.260.000142
ORF1ab/nsp2411A411VgCtgTt55AY.710.002375
ORF1ab/nsp2411A411VgCtgTt55B.1.1.3060.002192
ORF1ab/nsp2411A411VgCtgTt55B.1.2400.001078
ORF1ab/nsp2411A411VgCtgTt55B.1.3190.015244
ORF1ab/nsp2411A411VgCtgTt44AY.1070.001864
ORF1ab/nsp2411A411VgCtgTt44AY.4.50.00043
ORF1ab/nsp2411A411VgCtgTt44AY.450.000487
ORF1ab/nsp2411A411VgCtgTt44B.1.1.1610.014134
ORF1ab/nsp2411A411VgCtgTt44B.1.1.2140.000222
ORF1ab/nsp2411A411VgCtgTt44B.1.1.570.045977
ORF1ab/nsp2411A411VgCtgTt44B.1.2430.000278
ORF1ab/nsp2411A411VgCtgTt44B.1.5250.000453
ORF1ab/nsp2411A411VgCtgTt44B.1.6210.000354
ORF1ab/nsp2411A411VgCtgTt33A.23.10.002113
ORF1ab/nsp2411A411VgCtgTt33AS.10.028571
ORF1ab/nsp2411A411VgCtgTt33AY.1180.000188
ORF1ab/nsp2411A411VgCtgTt33AY.120.20.003856
ORF1ab/nsp2411A411VgCtgTt33AY.4.10.002212
ORF1ab/nsp2411A411VgCtgTt33AY.4.20.000065
ORF1ab/nsp2411A411VgCtgTt33AY.410.000882
ORF1ab/nsp2411A411VgCtgTt33AY.420.000121
ORF1ab/nsp2411A411VgCtgTt33AY.620.001307
ORF1ab/nsp2411A411VgCtgTt33AY.9.10.000251
ORF1ab/nsp2411A411VgCtgTt33B.1.1.2220.000612
ORF1ab/nsp2411A411VgCtgTt33B.1.1.2840.000322
ORF1ab/nsp2411A411VgCtgTt33B.1.1.370.000579
ORF1ab/nsp2411A411VgCtgTt33B.1.1260.003827
ORF1ab/nsp2411A411VgCtgTt33B.1.3620.004622
ORF1ab/nsp2411A411VgCtgTt33B.1.4160.003807
ORF1ab/nsp2411A411VgCtgTt33B.1.466.20.001174
ORF1ab/nsp2411A411VgCtgTt22A.30.004193
ORF1ab/nsp2411A411VgCtgTt22AY.1100.000225
ORF1ab/nsp2411A411VgCtgTt22AY.130.000322
ORF1ab/nsp2411A411VgCtgTt22AY.3.10.000171
ORF1ab/nsp2411A411VgCtgTt22AY.330.000134
ORF1ab/nsp2411A411VgCtgTt22AY.360.000296
ORF1ab/nsp2411A411VgCtgTt22AY.39.10.000079
ORF1ab/nsp2411A411VgCtgTt22AY.460.000208
ORF1ab/nsp2411A411VgCtgTt22AY.46.40.000329
ORF1ab/nsp2411A411VgCtgTt22AY.46.50.000397
ORF1ab/nsp2411A411VgCtgTt22AY.46.60.000144
ORF1ab/nsp2411A411VgCtgTt22AY.70.000392
ORF1ab/nsp2411A411VgCtgTt22AY.800.002257
ORF1ab/nsp2411A411VgCtgTt22AY.840.000875
ORF1ab/nsp2411A411VgCtgTt22AY.850.000854
ORF1ab/nsp2411A411VgCtgTt22AY.880.001768
ORF1ab/nsp2411A411VgCtgTt22AY.920.000575
ORF1ab/nsp2411A411VgCtgTt22AY.99.10.003106
ORF1ab/nsp2411A411VgCtgTt22B.1.1.1700.002494
ORF1ab/nsp2411A411VgCtgTt22B.1.1.1980.002937
ORF1ab/nsp2411A411VgCtgTt22B.1.1.3120.003824
ORF1ab/nsp2411A411VgCtgTt22B.1.1.3630.011976
ORF1ab/nsp2411A411VgCtgTt22B.1.1.3680.006173
ORF1ab/nsp2411A411VgCtgTt22B.1.1.4090.005666
ORF1ab/nsp2411A411VgCtgTt22B.1.1.4640.002946
ORF1ab/nsp2411A411VgCtgTt22B.1.1.5260.007092
ORF1ab/nsp2411A411VgCtgTt22B.1.160.300.005952
ORF1ab/nsp2411A411VgCtgTt22B.1.177.60.001953
ORF1ab/nsp2411A411VgCtgTt22B.1.177.810.000379
ORF1ab/nsp2411A411VgCtgTt22B.1.177.820.000955
ORF1ab/nsp2411A411VgCtgTt22B.1.177.860.000367
ORF1ab/nsp2411A411VgCtgTt22B.1.177.90.002663
ORF1ab/nsp2411A411VgCtgTt22B.1.2060.001631
ORF1ab/nsp2411A411VgCtgTt22B.1.3110.000549
ORF1ab/nsp2411A411VgCtgTt22B.1.3300.057143
ORF1ab/nsp2411A411VgCtgTt22B.1.36.270.001527
ORF1ab/nsp2411A411VgCtgTt22B.1.36.290.001035
ORF1ab/nsp2411A411VgCtgTt22B.1.3750.001639
ORF1ab/nsp2411A411VgCtgTt22B.1.4590.008163
ORF1ab/nsp2411A411VgCtgTt22B.1.5070.022472
ORF1ab/nsp2411A411VgCtgTt22B.1.5740.004301
ORF1ab/nsp2411A411VgCtgTt22B.1.5770.001375
ORF1ab/nsp2411A411VgCtgTt22B.1.6000.011696
ORF1ab/nsp2411A411VgCtgTt22B.1.617.10.000258
ORF1ab/nsp2411A411VgCtgTt22B.400.000729
ORF1ab/nsp2411A411VgCtgTt22C.360.001821
ORF1ab/nsp2411A411VgCtgTt22P.1.130.001797
ORF1ab/nsp2411A411VgCtgTt22P.1.140.000096
ORF1ab/nsp2411A411VgCtgTt22P.1.20.002312
ORF1ab/nsp2411A411VgCtgTt22Q.20.001227
ORF1ab/nsp2411A411VgCtgTt22Q.30.00029
ORF1ab/nsp2411A411VgCtgTt11A0.000387
ORF1ab/nsp2411A411VgCtgTt11A.10.000282
ORF1ab/nsp2411A411VgCtgTt11A.230.010526
ORF1ab/nsp2411A411VgCtgTt11A.270.001656
ORF1ab/nsp2411A411VgCtgTt11AD.20.000219
ORF1ab/nsp2411A411VgCtgTt11AL.10.012987
ORF1ab/nsp2411A411VgCtgTt11AT.10.005128
ORF1ab/nsp2411A411VgCtgTt11AY.10.000396
ORF1ab/nsp2411A411VgCtgTt11AY.1010.00049
ORF1ab/nsp2411A411VgCtgTt11AY.1040.001984
ORF1ab/nsp2411A411VgCtgTt11AY.1110.000183
ORF1ab/nsp2411A411VgCtgTt11AY.120.2.10.000498
ORF1ab/nsp2411A411VgCtgTt11AY.160.00038
ORF1ab/nsp2411A411VgCtgTt11AY.23.10.000417
ORF1ab/nsp2411A411VgCtgTt11AY.29.10.000221
ORF1ab/nsp2411A411VgCtgTt11AY.300.000396
ORF1ab/nsp2411A411VgCtgTt11AY.340.000097
ORF1ab/nsp2411A411VgCtgTt11AY.350.000233
ORF1ab/nsp2411A411VgCtgTt11AY.560.001605
ORF1ab/nsp2411A411VgCtgTt11AY.590.00053
ORF1ab/nsp2411A411VgCtgTt11AY.690.000187
ORF1ab/nsp2411A411VgCtgTt11AY.7.10.000113
ORF1ab/nsp2411A411VgCtgTt11AY.930.000273
ORF1ab/nsp2411A411VgCtgTt11AY.950.000761
ORF1ab/nsp2411A411VgCtgTt11AY.99.20.000092
ORF1ab/nsp2411A411VgCtgTt11B0.000128
ORF1ab/nsp2411A411VgCtgTt11B.1.1.10.000327
ORF1ab/nsp2411A411VgCtgTt11B.1.1.100.001115
ORF1ab/nsp2411A411VgCtgTt11B.1.1.1410.002012
ORF1ab/nsp2411A411VgCtgTt11B.1.1.1760.000439
ORF1ab/nsp2411A411VgCtgTt11B.1.1.1860.003436
ORF1ab/nsp2411A411VgCtgTt11B.1.1.2040.00304
ORF1ab/nsp2411A411VgCtgTt11B.1.1.2170.003636
ORF1ab/nsp2411A411VgCtgTt11B.1.1.250.000569
ORF1ab/nsp2411A411VgCtgTt11B.1.1.2570.009709
ORF1ab/nsp2411A411VgCtgTt11B.1.1.2730.006757
ORF1ab/nsp2411A411VgCtgTt11B.1.1.2770.000759
ORF1ab/nsp2411A411VgCtgTt11B.1.1.280.000311
ORF1ab/nsp2411A411VgCtgTt11B.1.1.310.066667
ORF1ab/nsp2411A411VgCtgTt11B.1.1.3110.000358
ORF1ab/nsp2411A411VgCtgTt11B.1.1.3180.000302
ORF1ab/nsp2411A411VgCtgTt11B.1.1.330.000421
ORF1ab/nsp2411A411VgCtgTt11B.1.1.3480.000796
ORF1ab/nsp2411A411VgCtgTt11B.1.1.3690.000446
ORF1ab/nsp2411A411VgCtgTt11B.1.1.3770.001381
ORF1ab/nsp2411A411VgCtgTt11B.1.1.390.00051
ORF1ab/nsp2411A411VgCtgTt11B.1.1.4320.001266
ORF1ab/nsp2411A411VgCtgTt11B.1.1.500.000679
ORF1ab/nsp2411A411VgCtgTt11B.1.1.510.001718
ORF1ab/nsp2411A411VgCtgTt11B.1.1.630.000386
ORF1ab/nsp2411A411VgCtgTt11B.1.110.30.000718
ORF1ab/nsp2411A411VgCtgTt11B.1.1110.001175
ORF1ab/nsp2411A411VgCtgTt11B.1.1240.007812
ORF1ab/nsp2411A411VgCtgTt11B.1.1470.000756
ORF1ab/nsp2411A411VgCtgTt11B.1.160.140.002119
ORF1ab/nsp2411A411VgCtgTt11B.1.177.160.000664
ORF1ab/nsp2411A411VgCtgTt11B.1.177.210.000076
ORF1ab/nsp2411A411VgCtgTt11B.1.177.260.006993
ORF1ab/nsp2411A411VgCtgTt11B.1.177.330.001645
ORF1ab/nsp2411A411VgCtgTt11B.1.177.350.000691
ORF1ab/nsp2411A411VgCtgTt11B.1.177.40.000211
ORF1ab/nsp2411A411VgCtgTt11B.1.177.440.000519
ORF1ab/nsp2411A411VgCtgTt11B.1.177.530.002392
ORF1ab/nsp2411A411VgCtgTt11B.1.177.770.000726
ORF1ab/nsp2411A411VgCtgTt11B.1.177.870.000728
ORF1ab/nsp2411A411VgCtgTt11B.1.2390.001221
ORF1ab/nsp2411A411VgCtgTt11B.1.2410.000812
ORF1ab/nsp2411A411VgCtgTt11B.1.2650.001271
ORF1ab/nsp2411A411VgCtgTt11B.1.2910.019231
ORF1ab/nsp2411A411VgCtgTt11B.1.3240.001605
ORF1ab/nsp2411A411VgCtgTt11B.1.3290.000608
ORF1ab/nsp2411A411VgCtgTt11B.1.36.160.001425
ORF1ab/nsp2411A411VgCtgTt11B.1.36.310.001751
ORF1ab/nsp2411A411VgCtgTt11B.1.36.360.000602
ORF1ab/nsp2411A411VgCtgTt11B.1.36.380.001642
ORF1ab/nsp2411A411VgCtgTt11B.1.3610.001289
ORF1ab/nsp2411A411VgCtgTt11B.1.3660.004878
ORF1ab/nsp2411A411VgCtgTt11B.1.3670.000792
ORF1ab/nsp2411A411VgCtgTt11B.1.3700.008
ORF1ab/nsp2411A411VgCtgTt11B.1.3800.006623
ORF1ab/nsp2411A411VgCtgTt11B.1.3910.001127
ORF1ab/nsp2411A411VgCtgTt11B.1.4000.000429
ORF1ab/nsp2411A411VgCtgTt11B.1.4040.001302
ORF1ab/nsp2411A411VgCtgTt11B.1.416.10.001563
ORF1ab/nsp2411A411VgCtgTt11B.1.438.10.000107
ORF1ab/nsp2411A411VgCtgTt11B.1.4560.003268
ORF1ab/nsp2411A411VgCtgTt11B.1.4680.005714
ORF1ab/nsp2411A411VgCtgTt11B.1.4990.00105
ORF1ab/nsp2411A411VgCtgTt11B.1.5460.003704
ORF1ab/nsp2411A411VgCtgTt11B.1.5640.000426
ORF1ab/nsp2411A411VgCtgTt11B.1.5880.00091
ORF1ab/nsp2411A411VgCtgTt11B.1.5900.004545
ORF1ab/nsp2411A411VgCtgTt11B.1.6120.002653
ORF1ab/nsp2411A411VgCtgTt11B.1.617.30.002985
ORF1ab/nsp2411A411VgCtgTt11B.60.00091
ORF1ab/nsp2411A411VgCtgTt11C.36.30.000567
ORF1ab/nsp2411A411VgCtgTt11N.40.004255
ORF1ab/nsp2411A411VgCtgTt11P.1.100.000269
ORF1ab/nsp2411A411VgCtgTt11P.1.120.000484
ORF1ab/nsp2411A411VgCtgTt11P.1.150.000232
ORF1ab/nsp2411A411VgCtgTt11P.20.000187
ORF1ab/nsp2411A411VgCtgTt11P.60.003145
ORF1ab/nsp2411A411VgCtgTt11Q.40.000455
ORF1ab/nsp2411A411VgCtgTt11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.