CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = A361V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2361A361VA541VnonsyngCtgTt3472347211886-1888

Details of the mutation A361V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2361A361VgCtgTt34723472All0.000664
ORF1ab/nsp2361A361VgCtgTt12051205B.1.177.210.092147
ORF1ab/nsp2361A361VgCtgTt772772B.1.1.70.000691
ORF1ab/nsp2361A361VgCtgTt371371B.1.5250.041983
ORF1ab/nsp2361A361VgCtgTt155155AY.40.000241
ORF1ab/nsp2361A361VgCtgTt138138AY.250.00083
ORF1ab/nsp2361A361VgCtgTt124124B.1.617.20.000467
ORF1ab/nsp2361A361VgCtgTt118118B.1.1661
ORF1ab/nsp2361A361VgCtgTt5555B.1.20.000484
ORF1ab/nsp2361A361VgCtgTt4848AY.120.10.015409
ORF1ab/nsp2361A361VgCtgTt4545AY.1210.006089
ORF1ab/nsp2361A361VgCtgTt4545B.1.2580.002995
ORF1ab/nsp2361A361VgCtgTt3838AY.260.001076
ORF1ab/nsp2361A361VgCtgTt2626AY.440.000158
ORF1ab/nsp2361A361VgCtgTt2424AY.30.000239
ORF1ab/nsp2361A361VgCtgTt2424AY.920.006895
ORF1ab/nsp2361A361VgCtgTt2323B.1.3510.000684
ORF1ab/nsp2361A361VgCtgTt1818B.10.000165
ORF1ab/nsp2361A361VgCtgTt1515AY.1030.000093
ORF1ab/nsp2361A361VgCtgTt1313B.1.10.000236
ORF1ab/nsp2361A361VgCtgTt1111AY.430.000049
ORF1ab/nsp2361A361VgCtgTt1010AY.46.60.000722
ORF1ab/nsp2361A361VgCtgTt99AY.840.003937
ORF1ab/nsp2361A361VgCtgTt99B.1.1770.000119
ORF1ab/nsp2361A361VgCtgTt88B.1.1600.00025
ORF1ab/nsp2361A361VgCtgTt88B.1.177.770.00581
ORF1ab/nsp2361A361VgCtgTt77AY.390.000173
ORF1ab/nsp2361A361VgCtgTt77AY.570.004593
ORF1ab/nsp2361A361VgCtgTt77AY.9.20.000257
ORF1ab/nsp2361A361VgCtgTt77B.1.5680.007778
ORF1ab/nsp2361A361VgCtgTt66AY.1200.000223
ORF1ab/nsp2361A361VgCtgTt66AY.90.000406
ORF1ab/nsp2361A361VgCtgTt66AY.9.10.000502
ORF1ab/nsp2361A361VgCtgTt55AY.1180.000313
ORF1ab/nsp2361A361VgCtgTt55B.1.1.5190.000199
ORF1ab/nsp2361A361VgCtgTt44AY.1020.000106
ORF1ab/nsp2361A361VgCtgTt44P.10.000063
ORF1ab/nsp2361A361VgCtgTt33AY.4.20.000065
ORF1ab/nsp2361A361VgCtgTt33AY.4.2.10.000447
ORF1ab/nsp2361A361VgCtgTt33AY.470.000093
ORF1ab/nsp2361A361VgCtgTt33B.1.4290.000071
ORF1ab/nsp2361A361VgCtgTt33B.1.438.10.000322
ORF1ab/nsp2361A361VgCtgTt33B.1.5260.000071
ORF1ab/nsp2361A361VgCtgTt33B.1.5640.001278
ORF1ab/nsp2361A361VgCtgTt33B.1.5960.000261
ORF1ab/nsp2361A361VgCtgTt33B.30.002492
ORF1ab/nsp2361A361VgCtgTt33B.400.001093
ORF1ab/nsp2361A361VgCtgTt22A.10.000564
ORF1ab/nsp2361A361VgCtgTt22AY.140.000176
ORF1ab/nsp2361A361VgCtgTt22AY.290.000032
ORF1ab/nsp2361A361VgCtgTt22AY.340.000194
ORF1ab/nsp2361A361VgCtgTt22AY.4.50.000215
ORF1ab/nsp2361A361VgCtgTt22AY.790.002421
ORF1ab/nsp2361A361VgCtgTt22B.1.1.3070.005063
ORF1ab/nsp2361A361VgCtgTt22B.1.1.5170.013605
ORF1ab/nsp2361A361VgCtgTt22B.1.177.350.001382
ORF1ab/nsp2361A361VgCtgTt22B.1.6210.000177
ORF1ab/nsp2361A361VgCtgTt11A.2.50.000499
ORF1ab/nsp2361A361VgCtgTt11AU.20.002421
ORF1ab/nsp2361A361VgCtgTt11AY.1170.000085
ORF1ab/nsp2361A361VgCtgTt11AY.1190.000035
ORF1ab/nsp2361A361VgCtgTt11AY.130.000161
ORF1ab/nsp2361A361VgCtgTt11AY.20.000356
ORF1ab/nsp2361A361VgCtgTt11AY.270.000065
ORF1ab/nsp2361A361VgCtgTt11AY.29.10.000221
ORF1ab/nsp2361A361VgCtgTt11AY.300.000396
ORF1ab/nsp2361A361VgCtgTt11AY.320.000532
ORF1ab/nsp2361A361VgCtgTt11AY.360.000148
ORF1ab/nsp2361A361VgCtgTt11AY.4.10.000737
ORF1ab/nsp2361A361VgCtgTt11AY.450.000122
ORF1ab/nsp2361A361VgCtgTt11AY.46.10.001027
ORF1ab/nsp2361A361VgCtgTt11AY.550.000917
ORF1ab/nsp2361A361VgCtgTt11AY.750.000056
ORF1ab/nsp2361A361VgCtgTt11B0.000128
ORF1ab/nsp2361A361VgCtgTt11B.1.1.10.000327
ORF1ab/nsp2361A361VgCtgTt11B.1.1.1610.003534
ORF1ab/nsp2361A361VgCtgTt11B.1.1.2140.000055
ORF1ab/nsp2361A361VgCtgTt11B.1.1.2190.005
ORF1ab/nsp2361A361VgCtgTt11B.1.1.4340.000349
ORF1ab/nsp2361A361VgCtgTt11B.1.1.5230.001563
ORF1ab/nsp2361A361VgCtgTt11B.1.1.830.00271
ORF1ab/nsp2361A361VgCtgTt11B.1.160.310.008065
ORF1ab/nsp2361A361VgCtgTt11B.1.1700.00431
ORF1ab/nsp2361A361VgCtgTt11B.1.177.540.000606
ORF1ab/nsp2361A361VgCtgTt11B.1.2210.000071
ORF1ab/nsp2361A361VgCtgTt11B.1.2340.000132
ORF1ab/nsp2361A361VgCtgTt11B.1.2390.001221
ORF1ab/nsp2361A361VgCtgTt11B.1.2430.00007
ORF1ab/nsp2361A361VgCtgTt11B.1.3490.000715
ORF1ab/nsp2361A361VgCtgTt11B.1.351.20.000303
ORF1ab/nsp2361A361VgCtgTt11B.1.36.290.000517
ORF1ab/nsp2361A361VgCtgTt11B.1.36.80.001
ORF1ab/nsp2361A361VgCtgTt11B.1.3960.000706
ORF1ab/nsp2361A361VgCtgTt11B.1.5650.00081
ORF1ab/nsp2361A361VgCtgTt11B.1.5820.000491
ORF1ab/nsp2361A361VgCtgTt11B.1.5910.010638
ORF1ab/nsp2361A361VgCtgTt11B.1.617.10.000129
ORF1ab/nsp2361A361VgCtgTt11B.6.60.000889
ORF1ab/nsp2361A361VgCtgTt11C.36.30.000567
ORF1ab/nsp2361A361VgCtgTt11C.370.000116
ORF1ab/nsp2361A361VgCtgTt11Q.30.000145
ORF1ab/nsp2361A361VgCtgTt11Q.80.000165
ORF1ab/nsp2361A361VgCtgTt11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.