CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 361 | A361V | A541V | nonsyn | gCt | gTt | 3472 | 3472 | 1 | 1886-1888 |
Details of the mutation A361V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 3472 | 3472 | All | 0.000664 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1205 | 1205 | B.1.177.21 | 0.092147 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 772 | 772 | B.1.1.7 | 0.000691 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 371 | 371 | B.1.525 | 0.041983 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 155 | 155 | AY.4 | 0.000241 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 138 | 138 | AY.25 | 0.00083 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 124 | 124 | B.1.617.2 | 0.000467 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 118 | 118 | B.1.166 | 1 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 55 | 55 | B.1.2 | 0.000484 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 48 | 48 | AY.120.1 | 0.015409 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 45 | 45 | AY.121 | 0.006089 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 45 | 45 | B.1.258 | 0.002995 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 38 | 38 | AY.26 | 0.001076 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 26 | 26 | AY.44 | 0.000158 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 24 | 24 | AY.3 | 0.000239 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 24 | 24 | AY.92 | 0.006895 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 23 | 23 | B.1.351 | 0.000684 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 18 | 18 | B.1 | 0.000165 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 15 | 15 | AY.103 | 0.000093 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 13 | 13 | B.1.1 | 0.000236 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 11 | 11 | AY.43 | 0.000049 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 10 | 10 | AY.46.6 | 0.000722 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 9 | 9 | AY.84 | 0.003937 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 9 | 9 | B.1.177 | 0.000119 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 8 | 8 | B.1.160 | 0.00025 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 8 | 8 | B.1.177.77 | 0.00581 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 7 | 7 | AY.57 | 0.004593 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 7 | 7 | AY.9.2 | 0.000257 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 7 | 7 | B.1.568 | 0.007778 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 6 | 6 | AY.120 | 0.000223 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 6 | 6 | AY.9 | 0.000406 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 6 | 6 | AY.9.1 | 0.000502 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 5 | 5 | AY.118 | 0.000313 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 3 | 3 | B.1.564 | 0.001278 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 3 | 3 | B.3 | 0.002492 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 3 | 3 | B.40 | 0.001093 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 2 | 2 | AY.79 | 0.002421 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 2 | 2 | B.1.1.307 | 0.005063 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 2 | 2 | B.1.1.517 | 0.013605 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 2 | 2 | B.1.177.35 | 0.001382 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.1.219 | 0.005 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.160.31 | 0.008065 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.591 | 0.010638 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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