CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = A336del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2336A336delA516deldelGCT---484811811-1813

Details of the mutation A336del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2336A336delGCT---4848All0.000009
ORF1ab/nsp2336A336delGCT---1212B.1.1.70.000011
ORF1ab/nsp2336A336delGCT---44B.1.1.330.001684
ORF1ab/nsp2336A336delGCT---44B.1.1770.000053
ORF1ab/nsp2336A336delGCT---33B.1.1.3480.002389
ORF1ab/nsp2336A336delGCT---22AY.40.000003
ORF1ab/nsp2336A336delGCT---22AY.440.000012
ORF1ab/nsp2336A336delGCT---22N.60.014184
ORF1ab/nsp2336A336delGCT---22P.20.000373
ORF1ab/nsp2336A336delGCT---11AY.1110.000183
ORF1ab/nsp2336A336delGCT---11AY.1130.000142
ORF1ab/nsp2336A336delGCT---11AY.250.000006
ORF1ab/nsp2336A336delGCT---11AY.290.000016
ORF1ab/nsp2336A336delGCT---11AY.4.50.000107
ORF1ab/nsp2336A336delGCT---11AY.430.000004
ORF1ab/nsp2336A336delGCT---11AY.46.60.000072
ORF1ab/nsp2336A336delGCT---11AY.670.000464
ORF1ab/nsp2336A336delGCT---11AY.840.000437
ORF1ab/nsp2336A336delGCT---11AY.9.20.000037
ORF1ab/nsp2336A336delGCT---11AY.990.001049
ORF1ab/nsp2336A336delGCT---11B.1.10.000018
ORF1ab/nsp2336A336delGCT---11B.1.1.2840.000107
ORF1ab/nsp2336A336delGCT---11B.1.20.000009
ORF1ab/nsp2336A336delGCT---11B.1.221.10.002907
ORF1ab/nsp2336A336delGCT---11B.1.360.000146
ORF1ab/nsp2336A336delGCT---11B.1.5250.000113

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.