CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = A336S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2336A336SA516SnonsynGctTct1941870.9639181811-1813
ORF1ab/nsp2336A336SA516SnonsynGCTAGC19470.03608251811-1813

Details of the mutation A336S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2336A336SGctTct187194All0.000036
ORF1ab/nsp2336A336SGCTAGC7194All0.000001
ORF1ab/nsp2336A336SGctTct3131B.1.1.70.000028
ORF1ab/nsp2336A336SGctTct2626AY.390.000642
ORF1ab/nsp2336A336SGctTct1919AY.250.000114
ORF1ab/nsp2336A336SGctTct1818AY.430.00008
ORF1ab/nsp2336A336SGctTct1213B.1.617.20.000045
ORF1ab/nsp2336A336SGCTAGC113B.1.617.20.000004
ORF1ab/nsp2336A336SGctTct1111AY.4.10.008112
ORF1ab/nsp2336A336SGctTct99AY.40.000014
ORF1ab/nsp2336A336SGctTct88AY.850.003417
ORF1ab/nsp2336A336SGctTct46AY.440.000024
ORF1ab/nsp2336A336SGCTAGC26AY.440.000012
ORF1ab/nsp2336A336SGctTct56B.10.000046
ORF1ab/nsp2336A336SGCTAGC16B.10.000009
ORF1ab/nsp2336A336SGctTct44AY.1030.000025
ORF1ab/nsp2336A336SGctTct33AY.116.10.000934
ORF1ab/nsp2336A336SGctTct33AY.320.001597
ORF1ab/nsp2336A336SGctTct33AY.900.002053
ORF1ab/nsp2336A336SGctTct22AY.1070.000932
ORF1ab/nsp2336A336SGctTct22AY.1190.000071
ORF1ab/nsp2336A336SGctTct12AY.30.00001
ORF1ab/nsp2336A336SGCTAGC12AY.30.00001
ORF1ab/nsp2336A336SGctTct22AY.610.00021
ORF1ab/nsp2336A336SGctTct22AY.640.00119
ORF1ab/nsp2336A336SGctTct22AY.70.000392
ORF1ab/nsp2336A336SGctTct22AY.98.10.000097
ORF1ab/nsp2336A336SGctTct22B.1.2430.000139
ORF1ab/nsp2336A336SGctTct22B.1.351.20.000605
ORF1ab/nsp2336A336SGctTct11A.2.50.000499
ORF1ab/nsp2336A336SGctTct11AY.1180.000063
ORF1ab/nsp2336A336SGCTAGC11AY.120.10.000321
ORF1ab/nsp2336A336SGctTct11AY.330.000067
ORF1ab/nsp2336A336SGctTct11AY.34.10.00051
ORF1ab/nsp2336A336SGctTct11AY.460.000104
ORF1ab/nsp2336A336SGctTct11B.1.10.000018
ORF1ab/nsp2336A336SGctTct11B.1.1.500.000679
ORF1ab/nsp2336A336SGctTct11B.1.177.440.000519
ORF1ab/nsp2336A336SGCTAGC11B.1.20.000009
ORF1ab/nsp2336A336SGctTct11B.1.3460.001311
ORF1ab/nsp2336A336SGctTct11B.1.36.290.000517
ORF1ab/nsp2336A336SGctTct11B.1.3960.000706
ORF1ab/nsp2336A336SGctTct11B.1.4290.000024
ORF1ab/nsp2336A336SGctTct11B.1.5960.000087
ORF1ab/nsp2336A336SGctTct11D.20.000075

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.