CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = A26V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp226A26VA206VnonsyngCagTa316131600.999684881-883
ORF1ab/nsp226A26VA206VnonsyngCAgTG316110.000316356881-883

Details of the mutation A26V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp226A26VgCagTa31603161All0.000604
ORF1ab/nsp226A26VgCAgTG13161All0
ORF1ab/nsp226A26VgCagTa680680B.1.1.70.000609
ORF1ab/nsp226A26VgCagTa662662B.10.006064
ORF1ab/nsp226A26VgCagTa490490AY.1030.003042
ORF1ab/nsp226A26VgCagTa446446B.1.1270.98022
ORF1ab/nsp226A26VgCagTa178178B.1.20.001567
ORF1ab/nsp226A26VgCagTa9696AY.290.001514
ORF1ab/nsp226A26VgCagTa6767B.1.2821
ORF1ab/nsp226A26VgCagTa6464B.1.617.20.000241
ORF1ab/nsp226A26VgCagTa5656AY.50.001156
ORF1ab/nsp226A26VgCagTa2727AY.250.000162
ORF1ab/nsp226A26VgCagTa2626AY.30.000259
ORF1ab/nsp226A26VgCagTa2525AY.40.000039
ORF1ab/nsp226A26VgCagTa2424AY.4.20.000521
ORF1ab/nsp226A26VgCagTa2020P.20.003733
ORF1ab/nsp226A26VgCagTa1919AY.390.00047
ORF1ab/nsp226A26VgCagTa1818AY.1020.000477
ORF1ab/nsp226A26VgCagTa1313AY.4.30.010943
ORF1ab/nsp226A26VgCagTa1313B.1.6090.006232
ORF1ab/nsp226A26VgCagTa1313P.10.000205
ORF1ab/nsp226A26VgCagTa1212AY.370.003793
ORF1ab/nsp226A26VgCagTa1212AY.430.000053
ORF1ab/nsp226A26VgCagTa1111AY.440.000067
ORF1ab/nsp226A26VgCagTa88C.36.10.033195
ORF1ab/nsp226A26VgCagTa77AY.116.10.00218
ORF1ab/nsp226A26VgCagTa77B.1.360.001021
ORF1ab/nsp226A26VgCagTa77B.1.4290.000165
ORF1ab/nsp226A26VgCagTa66AY.1210.000812
ORF1ab/nsp226A26VgCagTa66AY.260.00017
ORF1ab/nsp226A26VgCagTa66B.1.177.810.001136
ORF1ab/nsp226A26VgCagTa66R.10.00054
ORF1ab/nsp226A26VgCagTa55B.1.466.20.001956
ORF1ab/nsp226A26VgCagTa44AY.1040.007937
ORF1ab/nsp226A26VgCagTa44AY.1180.000251
ORF1ab/nsp226A26VgCagTa44AY.200.000155
ORF1ab/nsp226A26VgCagTa44B.1.1770.000053
ORF1ab/nsp226A26VgCagTa33AY.360.000445
ORF1ab/nsp226A26VgCagTa33B.1.10.000054
ORF1ab/nsp226A26VgCagTa33B.1.2210.000213
ORF1ab/nsp226A26VgCagTa33B.1.3510.000089
ORF1ab/nsp226A26VgCagTa33B.1.36.180.001261
ORF1ab/nsp226A26VgCagTa33B.1.3960.002117
ORF1ab/nsp226A26VgCagTa33B.1.4970.000944
ORF1ab/nsp226A26VgCagTa33B.1.5260.000071
ORF1ab/nsp226A26VgCAgTG120.055556
ORF1ab/nsp226A26VgCagTa120.055556
ORF1ab/nsp226A26VgCagTa22AY.1000.000092
ORF1ab/nsp226A26VgCagTa22AY.1170.000169
ORF1ab/nsp226A26VgCagTa22AY.230.000139
ORF1ab/nsp226A26VgCagTa22AY.29.10.000441
ORF1ab/nsp226A26VgCagTa22AY.420.00008
ORF1ab/nsp226A26VgCagTa22AY.460.000208
ORF1ab/nsp226A26VgCagTa22AY.46.20.001271
ORF1ab/nsp226A26VgCagTa22AY.46.30.001867
ORF1ab/nsp226A26VgCagTa22AY.470.000062
ORF1ab/nsp226A26VgCagTa22B.1.1.3060.000877
ORF1ab/nsp226A26VgCagTa22B.1.1.5190.000079
ORF1ab/nsp226A26VgCagTa22B.1.1470.001512
ORF1ab/nsp226A26VgCagTa22B.1.2430.000139
ORF1ab/nsp226A26VgCagTa22B.1.2580.000133
ORF1ab/nsp226A26VgCagTa22B.1.258.170.000208
ORF1ab/nsp226A26VgCagTa22B.1.36.380.003284
ORF1ab/nsp226A26VgCagTa22B.1.3950.014085
ORF1ab/nsp226A26VgCagTa22B.1.4680.011429
ORF1ab/nsp226A26VgCagTa22B.1.4990.002101
ORF1ab/nsp226A26VgCagTa22B.1.5240.002813
ORF1ab/nsp226A26VgCagTa22B.1.5680.002222
ORF1ab/nsp226A26VgCagTa22B.1.6370.000146
ORF1ab/nsp226A26VgCagTa22Q.30.00029
ORF1ab/nsp226A26VgCagTa22Q.80.00033
ORF1ab/nsp226A26VgCagTa11A.280.002646
ORF1ab/nsp226A26VgCagTa11AS.20.015625
ORF1ab/nsp226A26VgCagTa11AY.1050.000643
ORF1ab/nsp226A26VgCagTa11AY.1070.000466
ORF1ab/nsp226A26VgCagTa11AY.1190.000035
ORF1ab/nsp226A26VgCagTa11AY.120.000316
ORF1ab/nsp226A26VgCagTa11AY.1200.000037
ORF1ab/nsp226A26VgCagTa11AY.270.000065
ORF1ab/nsp226A26VgCagTa11AY.330.000067
ORF1ab/nsp226A26VgCagTa11AY.46.40.000165
ORF1ab/nsp226A26VgCagTa11AY.46.50.000198
ORF1ab/nsp226A26VgCagTa11AY.530.000288
ORF1ab/nsp226A26VgCagTa11AY.680.000274
ORF1ab/nsp226A26VgCagTa11AY.980.000079
ORF1ab/nsp226A26VgCagTa11AY.98.10.000048
ORF1ab/nsp226A26VgCagTa11AY.99.20.000092
ORF1ab/nsp226A26VgCagTa11B.1.1.10.000327
ORF1ab/nsp226A26VgCagTa11B.1.1.2100.005714
ORF1ab/nsp226A26VgCagTa11B.1.1.2160.00089
ORF1ab/nsp226A26VgCagTa11B.1.1.2220.000204
ORF1ab/nsp226A26VgCagTa11B.1.1.2630.001558
ORF1ab/nsp226A26VgCagTa11B.1.1.370.000193
ORF1ab/nsp226A26VgCagTa11B.1.1.5230.001563
ORF1ab/nsp226A26VgCagTa11B.1.177.600.000218
ORF1ab/nsp226A26VgCagTa11B.1.177.80.000752
ORF1ab/nsp226A26VgCagTa11B.1.177.850.005435
ORF1ab/nsp226A26VgCagTa11B.1.177.860.000183
ORF1ab/nsp226A26VgCagTa11B.1.3460.001311
ORF1ab/nsp226A26VgCagTa11B.1.36.170.000494
ORF1ab/nsp226A26VgCagTa11B.1.3670.000792
ORF1ab/nsp226A26VgCagTa11B.1.4000.000429
ORF1ab/nsp226A26VgCagTa11B.1.4280.00102
ORF1ab/nsp226A26VgCagTa11B.1.4590.004082
ORF1ab/nsp226A26VgCagTa11B.1.4620.007246
ORF1ab/nsp226A26VgCagTa11B.1.5250.000113
ORF1ab/nsp226A26VgCagTa11B.1.5960.000087
ORF1ab/nsp226A26VgCagTa11B.1.5990.00365
ORF1ab/nsp226A26VgCagTa11B.1.617.10.000129
ORF1ab/nsp226A26VgCagTa11C.370.000116
ORF1ab/nsp226A26VgCagTa11P.1.70.000319
ORF1ab/nsp226A26VgCagTa11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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