CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 26 | A26V | A206V | nonsyn | gCa | gTa | 3161 | 3160 | 0.999684 | 881-883 |
ORF1ab/nsp2 | 26 | A26V | A206V | nonsyn | gCA | gTG | 3161 | 1 | 0.000316356 | 881-883 |
Details of the mutation A26V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 3160 | 3161 | All | 0.000604 |
ORF1ab/nsp2 | 26 | A26V | gCA | gTG | 1 | 3161 | All | 0 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 680 | 680 | B.1.1.7 | 0.000609 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 662 | 662 | B.1 | 0.006064 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 490 | 490 | AY.103 | 0.003042 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 446 | 446 | B.1.127 | 0.98022 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 178 | 178 | B.1.2 | 0.001567 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 96 | 96 | AY.29 | 0.001514 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 67 | 67 | B.1.282 | 1 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 64 | 64 | B.1.617.2 | 0.000241 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 56 | 56 | AY.5 | 0.001156 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 27 | 27 | AY.25 | 0.000162 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 26 | 26 | AY.3 | 0.000259 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 25 | 25 | AY.4 | 0.000039 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 24 | 24 | AY.4.2 | 0.000521 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 20 | 20 | P.2 | 0.003733 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 19 | 19 | AY.39 | 0.00047 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 18 | 18 | AY.102 | 0.000477 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 13 | 13 | AY.4.3 | 0.010943 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 13 | 13 | B.1.609 | 0.006232 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 13 | 13 | P.1 | 0.000205 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 12 | 12 | AY.37 | 0.003793 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 12 | 12 | AY.43 | 0.000053 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 11 | 11 | AY.44 | 0.000067 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 8 | 8 | C.36.1 | 0.033195 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 7 | 7 | AY.116.1 | 0.00218 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 7 | 7 | B.1.36 | 0.001021 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 7 | 7 | B.1.429 | 0.000165 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 6 | 6 | AY.121 | 0.000812 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 6 | 6 | AY.26 | 0.00017 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 6 | 6 | B.1.177.81 | 0.001136 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 6 | 6 | R.1 | 0.00054 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 5 | 5 | B.1.466.2 | 0.001956 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 4 | 4 | AY.104 | 0.007937 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 3 | 3 | B.1.36.18 | 0.001261 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 3 | 3 | B.1.396 | 0.002117 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 3 | 3 | B.1.497 | 0.000944 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp2 | 26 | A26V | gCA | gTG | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 2 | 2 | AY.46.3 | 0.001867 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 2 | 2 | B.1.147 | 0.001512 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 2 | 2 | B.1.36.38 | 0.003284 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 2 | 2 | B.1.395 | 0.014085 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 2 | 2 | B.1.468 | 0.011429 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 2 | 2 | B.1.524 | 0.002813 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 2 | 2 | B.1.568 | 0.002222 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | AS.2 | 0.015625 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | B.1.1.210 | 0.005714 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | B.1.177.85 | 0.005435 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp2 | 26 | A26V | gCa | gTa | 1 | 1 | Q.1 | 0.000126 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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