CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = A26A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp226A26AA206AsyngcAgcG2611660.636015881-883
ORF1ab/nsp226A26AA206AsyngcAgcT261840.321839881-883
ORF1ab/nsp226A26AA206AsyngcAgcC261110.0421456881-883

Details of the mutation A26A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp226A26AgcAgcG166261All0.000032
ORF1ab/nsp226A26AgcAgcT84261All0.000016
ORF1ab/nsp226A26AgcAgcC11261All0.000002
ORF1ab/nsp226A26AgcAgcG5659B.1.1.70.00005
ORF1ab/nsp226A26AgcAgcT259B.1.1.70.000002
ORF1ab/nsp226A26AgcAgcC159B.1.1.70.000001
ORF1ab/nsp226A26AgcAgcT5656AY.4.20.001215
ORF1ab/nsp226A26AgcAgcG2728B.1.10.00049
ORF1ab/nsp226A26AgcAgcT128B.1.10.000018
ORF1ab/nsp226A26AgcAgcG1013AY.40.000016
ORF1ab/nsp226A26AgcAgcT213AY.40.000003
ORF1ab/nsp226A26AgcAgcC113AY.40.000002
ORF1ab/nsp226A26AgcAgcG712AY.1030.000043
ORF1ab/nsp226A26AgcAgcT512AY.1030.000031
ORF1ab/nsp226A26AgcAgcG711B.1.617.20.000026
ORF1ab/nsp226A26AgcAgcT411B.1.617.20.000015
ORF1ab/nsp226A26AgcAgcT1010B.1.5250.001132
ORF1ab/nsp226A26AgcAgcG99P.10.000142
ORF1ab/nsp226A26AgcAgcG78AY.9.20.000257
ORF1ab/nsp226A26AgcAgcC18AY.9.20.000037
ORF1ab/nsp226A26AgcAgcG77B.1.1.2140.000388
ORF1ab/nsp226A26AgcAgcG33AY.440.000018
ORF1ab/nsp226A26AgcAgcG23B.1.3510.000059
ORF1ab/nsp226A26AgcAgcT13B.1.3510.00003
ORF1ab/nsp226A26AgcAgcG22AY.1160.000574
ORF1ab/nsp226A26AgcAgcG22AY.230.000139
ORF1ab/nsp226A26AgcAgcC12AY.530.000288
ORF1ab/nsp226A26AgcAgcG12AY.530.000288
ORF1ab/nsp226A26AgcAgcG22AY.98.10.000097
ORF1ab/nsp226A26AgcAgcG22B.1.1.280.000622
ORF1ab/nsp226A26AgcAgcG22B.1.1600.000062
ORF1ab/nsp226A26AgcAgcG22B.1.4290.000047
ORF1ab/nsp226A26AgcAgcG22Q.80.00033
ORF1ab/nsp226A26AgcAgcG110.055556
ORF1ab/nsp226A26AgcAgcC11A.10.000282
ORF1ab/nsp226A26AgcAgcG11A.2.50.000499
ORF1ab/nsp226A26AgcAgcT11AY.1170.000085
ORF1ab/nsp226A26AgcAgcG11AY.160.00038
ORF1ab/nsp226A26AgcAgcC11AY.240.000431
ORF1ab/nsp226A26AgcAgcG11AY.30.00001
ORF1ab/nsp226A26AgcAgcG11AY.3.10.000085
ORF1ab/nsp226A26AgcAgcT11AY.460.000104
ORF1ab/nsp226A26AgcAgcG11AY.50.000021
ORF1ab/nsp226A26AgcAgcG11AZ.20.000821
ORF1ab/nsp226A26AgcAgcC11B0.000128
ORF1ab/nsp226A26AgcAgcT11B.10.000009
ORF1ab/nsp226A26AgcAgcG11B.1.1.2160.00089
ORF1ab/nsp226A26AgcAgcG11B.1.1.4090.002833
ORF1ab/nsp226A26AgcAgcG11B.1.177.570.000281
ORF1ab/nsp226A26AgcAgcG11B.1.177.600.000218
ORF1ab/nsp226A26AgcAgcG11B.1.177.620.001192
ORF1ab/nsp226A26AgcAgcG11B.1.2340.000132
ORF1ab/nsp226A26AgcAgcC11B.1.2980.002114
ORF1ab/nsp226A26AgcAgcC11B.1.36.170.000494
ORF1ab/nsp226A26AgcAgcG11B.1.36.220.001208
ORF1ab/nsp226A26AgcAgcC11B.1.3910.001127
ORF1ab/nsp226A26AgcAgcG11B.4.50.011905
ORF1ab/nsp226A26AgcAgcC11D.20.000075
ORF1ab/nsp226A26AgcAgcG11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.