CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : Mut = A1A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp21A1AA181AsyngcAgcT13827430.537627806-808
ORF1ab/nsp21A1AA181AsyngcAgcG13826180.447178806-808
ORF1ab/nsp21A1AA181AsyngcAgcC1382210.0151954806-808

Details of the mutation A1A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp21A1AgcAgcT7431382All0.000142
ORF1ab/nsp21A1AgcAgcG6181382All0.000118
ORF1ab/nsp21A1AgcAgcC211382All0.000004
ORF1ab/nsp21A1AgcAgcT537543AY.250.00323
ORF1ab/nsp21A1AgcAgcG6543AY.250.000036
ORF1ab/nsp21A1AgcAgcG194228B.1.1.70.000174
ORF1ab/nsp21A1AgcAgcT31228B.1.1.70.000028
ORF1ab/nsp21A1AgcAgcC3228B.1.1.70.000003
ORF1ab/nsp21A1AgcAgcG6666AY.330.004407
ORF1ab/nsp21A1AgcAgcG2855AY.40.000044
ORF1ab/nsp21A1AgcAgcT2755AY.40.000042
ORF1ab/nsp21A1AgcAgcG3838B.1.5170.016225
ORF1ab/nsp21A1AgcAgcG2632AY.1030.000161
ORF1ab/nsp21A1AgcAgcT632AY.1030.000037
ORF1ab/nsp21A1AgcAgcG3030AY.1180.001879
ORF1ab/nsp21A1AgcAgcT1226B.1.617.20.000045
ORF1ab/nsp21A1AgcAgcG1126B.1.617.20.000041
ORF1ab/nsp21A1AgcAgcC326B.1.617.20.000011
ORF1ab/nsp21A1AgcAgcG1224AY.30.000119
ORF1ab/nsp21A1AgcAgcT1124AY.30.000109
ORF1ab/nsp21A1AgcAgcC124AY.30.00001
ORF1ab/nsp21A1AgcAgcG2324B.1.5250.002603
ORF1ab/nsp21A1AgcAgcC124B.1.5250.000113
ORF1ab/nsp21A1AgcAgcT1019AD.20.00219
ORF1ab/nsp21A1AgcAgcG919AD.20.001971
ORF1ab/nsp21A1AgcAgcG1717B.1.351.20.005144
ORF1ab/nsp21A1AgcAgcT1316B.10.000119
ORF1ab/nsp21A1AgcAgcG316B.10.000027
ORF1ab/nsp21A1AgcAgcG1313AY.1210.001759
ORF1ab/nsp21A1AgcAgcT1313B.1.1340.071038
ORF1ab/nsp21A1AgcAgcC612AY.290.000095
ORF1ab/nsp21A1AgcAgcG612AY.290.000095
ORF1ab/nsp21A1AgcAgcG811AY.1020.000212
ORF1ab/nsp21A1AgcAgcT211AY.1020.000053
ORF1ab/nsp21A1AgcAgcC111AY.1020.000027
ORF1ab/nsp21A1AgcAgcG811AY.430.000035
ORF1ab/nsp21A1AgcAgcT211AY.430.000009
ORF1ab/nsp21A1AgcAgcC111AY.430.000004
ORF1ab/nsp21A1AgcAgcT811B.1.1770.000105
ORF1ab/nsp21A1AgcAgcG311B.1.1770.00004
ORF1ab/nsp21A1AgcAgcT611B.1.20.000053
ORF1ab/nsp21A1AgcAgcG411B.1.20.000035
ORF1ab/nsp21A1AgcAgcC111B.1.20.000009
ORF1ab/nsp21A1AgcAgcG1010B.1.177.90.013316
ORF1ab/nsp21A1AgcAgcG89AY.450.000973
ORF1ab/nsp21A1AgcAgcT19AY.450.000122
ORF1ab/nsp21A1AgcAgcG67AY.440.000037
ORF1ab/nsp21A1AgcAgcT17AY.440.000006
ORF1ab/nsp21A1AgcAgcT56AY.1130.000712
ORF1ab/nsp21A1AgcAgcC16AY.1130.000142
ORF1ab/nsp21A1AgcAgcG66AY.1190.000212
ORF1ab/nsp21A1AgcAgcG66AY.810.011952
ORF1ab/nsp21A1AgcAgcT46B.1.10.000073
ORF1ab/nsp21A1AgcAgcG26B.1.10.000036
ORF1ab/nsp21A1AgcAgcG56B.1.2210.000355
ORF1ab/nsp21A1AgcAgcT16B.1.2210.000071
ORF1ab/nsp21A1AgcAgcG45AY.1000.000184
ORF1ab/nsp21A1AgcAgcT15AY.1000.000046
ORF1ab/nsp21A1AgcAgcT55B.1.177.210.000382
ORF1ab/nsp21A1AgcAgcT55B.1.5960.000436
ORF1ab/nsp21A1AgcAgcG34AY.390.000074
ORF1ab/nsp21A1AgcAgcC14AY.390.000025
ORF1ab/nsp21A1AgcAgcT44AY.750.000224
ORF1ab/nsp21A1AgcAgcT44Q.30.00058
ORF1ab/nsp21A1AgcAgcG23AY.230.000139
ORF1ab/nsp21A1AgcAgcT13AY.230.00007
ORF1ab/nsp21A1AgcAgcG23AY.3.10.000171
ORF1ab/nsp21A1AgcAgcT13AY.3.10.000085
ORF1ab/nsp21A1AgcAgcT33AY.470.000093
ORF1ab/nsp21A1AgcAgcT33B.1.1.2790.003363
ORF1ab/nsp21A1AgcAgcG33B.1.1.280.000934
ORF1ab/nsp21A1AgcAgcG33B.1.1.3060.001315
ORF1ab/nsp21A1AgcAgcG33B.1.1.3690.001339
ORF1ab/nsp21A1AgcAgcG33B.1.2430.000209
ORF1ab/nsp21A1AgcAgcG33B.1.3360.007317
ORF1ab/nsp21A1AgcAgcT22A0.000774
ORF1ab/nsp21A1AgcAgcG22AY.1080.002205
ORF1ab/nsp21A1AgcAgcG22AY.200.000078
ORF1ab/nsp21A1AgcAgcG22AY.4.20.000043
ORF1ab/nsp21A1AgcAgcG12AY.50.000021
ORF1ab/nsp21A1AgcAgcT12AY.50.000021
ORF1ab/nsp21A1AgcAgcG22AY.90.000135
ORF1ab/nsp21A1AgcAgcG12AY.98.10.000048
ORF1ab/nsp21A1AgcAgcT12AY.98.10.000048
ORF1ab/nsp21A1AgcAgcG22B.1.1.1890.003026
ORF1ab/nsp21A1AgcAgcT22B.1.1.330.000842
ORF1ab/nsp21A1AgcAgcG22B.1.1.5190.000079
ORF1ab/nsp21A1AgcAgcG22B.1.177.600.000437
ORF1ab/nsp21A1AgcAgcT22B.1.3690.00057
ORF1ab/nsp21A1AgcAgcG22B.1.4290.000047
ORF1ab/nsp21A1AgcAgcG12P.1.70.000319
ORF1ab/nsp21A1AgcAgcT12P.1.70.000319
ORF1ab/nsp21A1AgcAgcG22P.30.00319
ORF1ab/nsp21A1AgcAgcT22R.10.00018
ORF1ab/nsp21A1AgcAgcC110.055556
ORF1ab/nsp21A1AgcAgcT11AY.110.001339
ORF1ab/nsp21A1AgcAgcG11AY.1110.000183
ORF1ab/nsp21A1AgcAgcT11AY.1160.000287
ORF1ab/nsp21A1AgcAgcT11AY.1200.000037
ORF1ab/nsp21A1AgcAgcG11AY.140.000088
ORF1ab/nsp21A1AgcAgcT11AY.260.000028
ORF1ab/nsp21A1AgcAgcG11AY.280.00189
ORF1ab/nsp21A1AgcAgcG11AY.4.10.000737
ORF1ab/nsp21A1AgcAgcG11AY.420.00004
ORF1ab/nsp21A1AgcAgcT11AY.460.000104
ORF1ab/nsp21A1AgcAgcT11AY.46.30.000934
ORF1ab/nsp21A1AgcAgcT11AY.46.40.000165
ORF1ab/nsp21A1AgcAgcG11AY.46.50.000198
ORF1ab/nsp21A1AgcAgcT11AY.46.60.000072
ORF1ab/nsp21A1AgcAgcT11AY.480.000465
ORF1ab/nsp21A1AgcAgcG11AY.5.30.000337
ORF1ab/nsp21A1AgcAgcG11AY.60.000041
ORF1ab/nsp21A1AgcAgcG11AY.620.000436
ORF1ab/nsp21A1AgcAgcG11AY.760.004831
ORF1ab/nsp21A1AgcAgcG11AY.950.000761
ORF1ab/nsp21A1AgcAgcC11B.1.1.2570.009709
ORF1ab/nsp21A1AgcAgcG11B.1.1.3170.000412
ORF1ab/nsp21A1AgcAgcG11B.1.1.3480.000796
ORF1ab/nsp21A1AgcAgcT11B.1.1.4200.001006
ORF1ab/nsp21A1AgcAgcT11B.1.177.830.001481
ORF1ab/nsp21A1AgcAgcT11B.1.2340.000132
ORF1ab/nsp21A1AgcAgcT11B.1.2650.001271
ORF1ab/nsp21A1AgcAgcG11B.1.36.290.000517
ORF1ab/nsp21A1AgcAgcG11B.1.36.70.004
ORF1ab/nsp21A1AgcAgcG11B.1.3750.00082
ORF1ab/nsp21A1AgcAgcT11B.1.4950.009091
ORF1ab/nsp21A1AgcAgcG11B.1.6090.000479
ORF1ab/nsp21A1AgcAgcG11B.1.6360.006711
ORF1ab/nsp21A1AgcAgcG11B.1.830.015385
ORF1ab/nsp21A1AgcAgcT11B.230.002924
ORF1ab/nsp21A1AgcAgcG11C.370.000116
ORF1ab/nsp21A1AgcAgcG11P.1.120.000484
ORF1ab/nsp21A1AgcAgcG11P.20.000187
ORF1ab/nsp21A1AgcAgcG11Q.10.000126