CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 99 & Codon = tcT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp299S99SS279SsyntcCtcT612160760.9926481100-1102

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp299S99StcCtcT60766121All0.001162
ORF1ab/nsp299S99StcCtcT986987B.1.1.70.000883
ORF1ab/nsp299S99StcCtcT425426B.1.20.003742
ORF1ab/nsp299S99StcCtcT377377B.1.5260.008861
ORF1ab/nsp299S99StcCtcT365367AY.40.000568
ORF1ab/nsp299S99StcCtcT309310AY.430.001369
ORF1ab/nsp299S99StcCtcT298298B.1.617.20.001122
ORF1ab/nsp299S99StcCtcT268269P.10.004222
ORF1ab/nsp299S99StcCtcT180180B.1.1.5190.007148
ORF1ab/nsp299S99StcCtcT180180B.1.5960.015685
ORF1ab/nsp299S99StcCtcT147147AY.250.000884
ORF1ab/nsp299S99StcCtcT144144AY.390.003558
ORF1ab/nsp299S99StcCtcT116117B.1.3510.003448
ORF1ab/nsp299S99StcCtcT113113B.1.1770.001488
ORF1ab/nsp299S99StcCtcT109109AY.3.10.009293
ORF1ab/nsp299S99StcCtcT102102AY.39.10.004041
ORF1ab/nsp299S99StcCtcT98101B.10.000898
ORF1ab/nsp299S99StcCtcT9394AY.440.000566
ORF1ab/nsp299S99StcCtcT8080B.1.177.210.006118
ORF1ab/nsp299S99StcCtcT7272AY.1190.002542
ORF1ab/nsp299S99StcCtcT5555AY.50.001136
ORF1ab/nsp299S99StcCtcT4654AY.30.000458
ORF1ab/nsp299S99StcCtcT5354B.1.4290.001247
ORF1ab/nsp299S99StcCtcT5252AY.1030.000323
ORF1ab/nsp299S99StcCtcT5252AY.200.002021
ORF1ab/nsp299S99StcCtcT5252B.1.10.000943
ORF1ab/nsp299S99StcCtcT5050B.1.1.3160.046253
ORF1ab/nsp299S99StcCtcT4646AY.260.001302
ORF1ab/nsp299S99StcCtcT4545B.1.4560.147059
ORF1ab/nsp299S99StcCtcT4444AY.290.000694
ORF1ab/nsp299S99StcCtcT4343B.1.1600.001341
ORF1ab/nsp299S99StcCtcT4141AY.1000.001886
ORF1ab/nsp299S99StcCtcT3737AY.230.002581
ORF1ab/nsp299S99StcCtcT3535AY.29.10.007718
ORF1ab/nsp299S99StcCtcT3232AY.4.20.000694
ORF1ab/nsp299S99StcCtcT3232C.370.003714
ORF1ab/nsp299S99StcCtcT2828AD.20.006131
ORF1ab/nsp299S99StcCtcT2828B.1.2430.001948
ORF1ab/nsp299S99StcCtcT2727AY.1020.000716
ORF1ab/nsp299S99StcCtcT2727AY.98.10.001308
ORF1ab/nsp299S99StcCtcT2626Q.10.003284
ORF1ab/nsp299S99StcCtcT2323B.1.177.540.013948
ORF1ab/nsp299S99StcCtcT2121B.1.258.170.002183
ORF1ab/nsp299S99StcCtcT2020B.1.2340.002639
ORF1ab/nsp299S99StcCtcT1818AY.1200.000669
ORF1ab/nsp299S99StcCtcT1818AY.340.001745
ORF1ab/nsp299S99StcCtcT1616B.1.1.390.008155
ORF1ab/nsp299S99StcCtcT1616B.1.36.290.008277
ORF1ab/nsp299S99StcCtcT1414AY.920.004022
ORF1ab/nsp299S99StcCtcT1313B0.001662
ORF1ab/nsp299S99StcCtcT1313B.1.4270.000656
ORF1ab/nsp299S99StcCtcT1313B.1.6370.00095
ORF1ab/nsp299S99StcCtcT1313P.1.70.004151
ORF1ab/nsp299S99StcCtcT1111A.2.50.005489
ORF1ab/nsp299S99StcCtcT1111AY.420.000443
ORF1ab/nsp299S99StcCtcT1111B.1.617.10.001419
ORF1ab/nsp299S99StcCtcT1010AY.450.001217
ORF1ab/nsp299S99StcCtcT1010AY.840.004374
ORF1ab/nsp299S99StcCtcT1010B.1.360.001459
ORF1ab/nsp299S99StcCtcT1010B.1.36.80.01
ORF1ab/nsp299S99StcCtcT1010P.1.160.003741
ORF1ab/nsp299S99StcCtcT1010Q.70.011111
ORF1ab/nsp299S99StcCtcT49AY.360.000593
ORF1ab/nsp299S99StcCtcT99AY.46.60.00065
ORF1ab/nsp299S99StcCtcT99AY.610.000943
ORF1ab/nsp299S99StcCtcT99B.1.2580.000599
ORF1ab/nsp299S99StcCtcT88A.10.002255
ORF1ab/nsp299S99StcCtcT88AY.9.10.00067
ORF1ab/nsp299S99StcCtcT88B.1.1.3170.003294
ORF1ab/nsp299S99StcCtcT88B.1.6280.002819
ORF1ab/nsp299S99StcCtcT88P.1.140.000382
ORF1ab/nsp299S99StcCtcT77AY.270.000453
ORF1ab/nsp299S99StcCtcT77AY.460.000729
ORF1ab/nsp299S99StcCtcT77AY.470.000218
ORF1ab/nsp299S99StcCtcT77AY.5.10.026316
ORF1ab/nsp299S99StcCtcT77AY.650.003731
ORF1ab/nsp299S99StcCtcT77AY.680.001916
ORF1ab/nsp299S99StcCtcT77B.1.1.2140.000388
ORF1ab/nsp299S99StcCtcT77B.1.177.860.001284
ORF1ab/nsp299S99StcCtcT77B.1.36.70.028
ORF1ab/nsp299S99StcCtcT77B.1.3610.009021
ORF1ab/nsp299S99StcCtcT77C.37.10.018325
ORF1ab/nsp299S99StcCtcT77C.380.056452
ORF1ab/nsp299S99StcCtcT77P.20.001306
ORF1ab/nsp299S99StcCtcT66AY.4.50.000645
ORF1ab/nsp299S99StcCtcT66B.1.3490.004289
ORF1ab/nsp299S99StcCtcT55AY.1010.002452
ORF1ab/nsp299S99StcCtcT55AY.1130.000712
ORF1ab/nsp299S99StcCtcT55AY.1180.000313
ORF1ab/nsp299S99StcCtcT55AY.330.000334
ORF1ab/nsp299S99StcCtcT55AY.560.008026
ORF1ab/nsp299S99StcCtcT55B.1.1.2220.00102
ORF1ab/nsp299S99StcCtcT55B.1.1.4340.001743
ORF1ab/nsp299S99StcCtcT55B.1.160.160.004647
ORF1ab/nsp299S99StcCtcT55B.1.3110.001373
ORF1ab/nsp299S99StcCtcT44AY.1170.000338
ORF1ab/nsp299S99StcCtcT44AY.120.10.001284
ORF1ab/nsp299S99StcCtcT44AY.130.000644
ORF1ab/nsp299S99StcCtcT44AY.140.000352
ORF1ab/nsp299S99StcCtcT44AY.750.000224
ORF1ab/nsp299S99StcCtcT44B.1.1.280.001245
ORF1ab/nsp299S99StcCtcT44B.1.1.3030.01105
ORF1ab/nsp299S99StcCtcT44B.1.1.3720.002755
ORF1ab/nsp299S99StcCtcT44B.1.110.30.002874
ORF1ab/nsp299S99StcCtcT44B.1.2650.005083
ORF1ab/nsp299S99StcCtcT44B.1.4280.004082
ORF1ab/nsp299S99StcCtcT44B.1.5880.00364
ORF1ab/nsp299S99StcCtcT44C.140.017316
ORF1ab/nsp299S99StcCtcT44P.1.150.000929
ORF1ab/nsp299S99StcCtcT33A.2.5.30.030928
ORF1ab/nsp299S99StcCtcT33AY.1210.000406
ORF1ab/nsp299S99StcCtcT33AY.60.000123
ORF1ab/nsp299S99StcCtcT33AY.90.000203
ORF1ab/nsp299S99StcCtcT33AY.980.000237
ORF1ab/nsp299S99StcCtcT33AY.99.20.000276
ORF1ab/nsp299S99StcCtcT33AZ.20.002463
ORF1ab/nsp299S99StcCtcT33B.1.1.1700.003741
ORF1ab/nsp299S99StcCtcT33B.1.1.700.001023
ORF1ab/nsp299S99StcCtcT33B.1.177.120.000455
ORF1ab/nsp299S99StcCtcT33B.1.177.620.003576
ORF1ab/nsp299S99StcCtcT33B.1.351.30.002629
ORF1ab/nsp299S99StcCtcT33B.1.3670.002377
ORF1ab/nsp299S99StcCtcT33B.1.466.20.001174
ORF1ab/nsp299S99StcCtcT33B.1.5950.000783
ORF1ab/nsp299S99StcCtcT33B.1.6210.000266
ORF1ab/nsp299S99StcCtcT33P.1.120.001452
ORF1ab/nsp299S99StcCtcT33P.30.004785
ORF1ab/nsp299S99StcCtcT33P.60.009434
ORF1ab/nsp299S99StcCtcT22AY.1100.000225
ORF1ab/nsp299S99StcCtcT22AY.120.000632
ORF1ab/nsp299S99StcCtcT22AY.120.2.10.000997
ORF1ab/nsp299S99StcCtcT22AY.700.000417
ORF1ab/nsp299S99StcCtcT22AZ.10.001735
ORF1ab/nsp299S99StcCtcT22B.1.1.10.000653
ORF1ab/nsp299S99StcCtcT22B.1.1.3060.000877
ORF1ab/nsp299S99StcCtcT22B.1.1.3370.007194
ORF1ab/nsp299S99StcCtcT22B.1.1.80.007168
ORF1ab/nsp299S99StcCtcT22B.1.1110.00235
ORF1ab/nsp299S99StcCtcT22B.1.1640.029851
ORF1ab/nsp299S99StcCtcT22B.1.177.40.000422
ORF1ab/nsp299S99StcCtcT22B.1.2210.000142
ORF1ab/nsp299S99StcCtcT22B.1.2320.001075
ORF1ab/nsp299S99StcCtcT22B.1.2400.000431
ORF1ab/nsp299S99StcCtcT22B.1.258.210.015504
ORF1ab/nsp299S99StcCtcT22B.1.351.20.000605
ORF1ab/nsp299S99StcCtcT22B.1.351.50.001199
ORF1ab/nsp299S99StcCtcT22B.1.438.10.000215
ORF1ab/nsp299S99StcCtcT22B.1.4620.014493
ORF1ab/nsp299S99StcCtcT22B.1.5170.000854
ORF1ab/nsp299S99StcCtcT22B.1.6230.001073
ORF1ab/nsp299S99StcCtcT22B.1.6300.010471
ORF1ab/nsp299S99StcCtcT22D.20.00015
ORF1ab/nsp299S99StcCtcT22R.10.00018
ORF1ab/nsp299S99StcCtcT11A.20.000662
ORF1ab/nsp299S99StcCtcT11A.2.40.003367
ORF1ab/nsp299S99StcCtcT11A.23.10.000704
ORF1ab/nsp299S99StcCtcT11AE.20.058824
ORF1ab/nsp299S99StcCtcT11AW.10.003049
ORF1ab/nsp299S99StcCtcT11AY.1090.00074
ORF1ab/nsp299S99StcCtcT11AY.1140.000231
ORF1ab/nsp299S99StcCtcT11AY.1160.000287
ORF1ab/nsp299S99StcCtcT11AY.300.000396
ORF1ab/nsp299S99StcCtcT11AY.320.000532
ORF1ab/nsp299S99StcCtcT11AY.34.10.00051
ORF1ab/nsp299S99StcCtcT11AY.4.2.10.000149
ORF1ab/nsp299S99StcCtcT11AY.400.000964
ORF1ab/nsp299S99StcCtcT11AY.410.000294
ORF1ab/nsp299S99StcCtcT11AY.46.10.001027
ORF1ab/nsp299S99StcCtcT11AY.46.40.000165
ORF1ab/nsp299S99StcCtcT11AY.480.000465
ORF1ab/nsp299S99StcCtcT11AY.520.000814
ORF1ab/nsp299S99StcCtcT11AY.540.000095
ORF1ab/nsp299S99StcCtcT11AY.590.00053
ORF1ab/nsp299S99StcCtcT11AY.620.000436
ORF1ab/nsp299S99StcCtcT11AY.640.000595
ORF1ab/nsp299S99StcCtcT11AY.7.20.000559
ORF1ab/nsp299S99StcCtcT11AY.710.000475
ORF1ab/nsp299S99StcCtcT11AY.740.000116
ORF1ab/nsp299S99StcCtcT11AY.80.000606
ORF1ab/nsp299S99StcCtcT11AY.820.001357
ORF1ab/nsp299S99StcCtcT11AY.890.004902
ORF1ab/nsp299S99StcCtcT11AY.9.20.000037
ORF1ab/nsp299S99StcCtcT11B.1.1.100.001115
ORF1ab/nsp299S99StcCtcT11B.1.1.1410.002012
ORF1ab/nsp299S99StcCtcT11B.1.1.1710.003676
ORF1ab/nsp299S99StcCtcT11B.1.1.1980.001468
ORF1ab/nsp299S99StcCtcT11B.1.1.2310.003096
ORF1ab/nsp299S99StcCtcT11B.1.1.2430.004082
ORF1ab/nsp299S99StcCtcT11B.1.1.2630.001558
ORF1ab/nsp299S99StcCtcT11B.1.1.2790.001121
ORF1ab/nsp299S99StcCtcT11B.1.1.290.010309
ORF1ab/nsp299S99StcCtcT11B.1.1.3070.002532
ORF1ab/nsp299S99StcCtcT11B.1.1.3120.001912
ORF1ab/nsp299S99StcCtcT11B.1.1.3180.000302
ORF1ab/nsp299S99StcCtcT11B.1.1.3690.000446
ORF1ab/nsp299S99StcCtcT11B.1.1.4130.006897
ORF1ab/nsp299S99StcCtcT11B.1.1.4160.000905
ORF1ab/nsp299S99StcCtcT11B.1.1.5280.004808
ORF1ab/nsp299S99StcCtcT11B.1.1.740.00431
ORF1ab/nsp299S99StcCtcT11B.1.1040.00369
ORF1ab/nsp299S99StcCtcT11B.1.177.430.001477
ORF1ab/nsp299S99StcCtcT11B.1.177.480.003125
ORF1ab/nsp299S99StcCtcT11B.1.177.520.001757
ORF1ab/nsp299S99StcCtcT11B.1.177.60.000977
ORF1ab/nsp299S99StcCtcT11B.1.177.820.000477
ORF1ab/nsp299S99StcCtcT11B.1.177.870.000728
ORF1ab/nsp299S99StcCtcT11B.1.2060.000816
ORF1ab/nsp299S99StcCtcT11B.1.214.20.0006
ORF1ab/nsp299S99StcCtcT11B.1.2470.014925
ORF1ab/nsp299S99StcCtcT11B.1.258.140.00098
ORF1ab/nsp299S99StcCtcT11B.1.3050.002151
ORF1ab/nsp299S99StcCtcT11B.1.3290.000608
ORF1ab/nsp299S99StcCtcT11B.1.3460.001311
ORF1ab/nsp299S99StcCtcT11B.1.36.180.00042
ORF1ab/nsp299S99StcCtcT11B.1.3750.00082
ORF1ab/nsp299S99StcCtcT11B.1.3890.001002
ORF1ab/nsp299S99StcCtcT11B.1.3960.000706
ORF1ab/nsp299S99StcCtcT11B.1.5250.000113
ORF1ab/nsp299S99StcCtcT11B.1.5490.007194
ORF1ab/nsp299S99StcCtcT11B.1.5600.00463
ORF1ab/nsp299S99StcCtcT11B.1.5610.000397
ORF1ab/nsp299S99StcCtcT11B.1.5750.000303
ORF1ab/nsp299S99StcCtcT11B.1.5760.000907
ORF1ab/nsp299S99StcCtcT11B.1.5770.000687
ORF1ab/nsp299S99StcCtcT11B.1.5780.017857
ORF1ab/nsp299S99StcCtcT11B.1.6000.005848
ORF1ab/nsp299S99StcCtcT11B.1.621.10.000506
ORF1ab/nsp299S99StcCtcT11B.1.6270.00202
ORF1ab/nsp299S99StcCtcT11B.1.90.006173
ORF1ab/nsp299S99StcCtcT11B.1.940.027027
ORF1ab/nsp299S99StcCtcT11B.120.00641
ORF1ab/nsp299S99StcCtcT11B.400.000364
ORF1ab/nsp299S99StcCtcT11B.6.60.000889
ORF1ab/nsp299S99StcCtcT11C.10.002392
ORF1ab/nsp299S99StcCtcT11C.160.00106
ORF1ab/nsp299S99StcCtcT11C.360.000911
ORF1ab/nsp299S99StcCtcT11C.36.30.000567
ORF1ab/nsp299S99StcCtcT11L.30.003546
ORF1ab/nsp299S99StcCtcT11P.1.10.000318
ORF1ab/nsp299S99StcCtcT11P.70.004367
ORF1ab/nsp299S99StcCtcT11Q.30.000145
ORF1ab/nsp299S99StcCtcT11Q.80.000165
ORF1ab/nsp299S99StcCtcT11Z.10.00289