CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 99 & Codon = Gcc

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp299S99AS279AnonsynTccGcc424211100-1102

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp299S99ATccGcc4242All0.000008
ORF1ab/nsp299S99ATccGcc99AY.440.000055
ORF1ab/nsp299S99ATccGcc99B.1.1.70.000008
ORF1ab/nsp299S99ATccGcc55AY.430.000022
ORF1ab/nsp299S99ATccGcc33AY.40.000005
ORF1ab/nsp299S99ATccGcc22B.1.1770.000026
ORF1ab/nsp299S99ATccGcc22B.1.20.000018
ORF1ab/nsp299S99ATccGcc110.055556
ORF1ab/nsp299S99ATccGcc11AY.1020.000027
ORF1ab/nsp299S99ATccGcc11AY.1030.000006
ORF1ab/nsp299S99ATccGcc11AY.1070.000466
ORF1ab/nsp299S99ATccGcc11AY.4.2.10.000149
ORF1ab/nsp299S99ATccGcc11AY.580.000907
ORF1ab/nsp299S99ATccGcc11AY.690.000187
ORF1ab/nsp299S99ATccGcc11AY.9.10.000084
ORF1ab/nsp299S99ATccGcc11AY.9.20.000037
ORF1ab/nsp299S99ATccGcc11B.1.4970.000315
ORF1ab/nsp299S99ATccGcc11B.1.5260.000024
ORF1ab/nsp299S99ATccGcc11B.1.617.20.000004