CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 97

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp297L97LL277LsynTtaCta5463900.7142861094-1096
ORF1ab/nsp297L97LL277LsynttAttG5461530.280221094-1096
ORF1ab/nsp297L97LL277LsynTtACtT54610.00183151094-1096
ORF1ab/nsp297L97LL277LsynTtACtG54610.00183151094-1096
ORF1ab/nsp297L97LL277LsynTtACtC54610.00183151094-1096
ORF1ab/nsp297L97SL277SnonsyntTatCa88870.9886361094-1096
ORF1ab/nsp297L97SL277SnonsynTTAAGT8810.01136361094-1096
ORF1ab/nsp297L97delL277deldelTTA---858511094-1096
ORF1ab/nsp297L97VL277VnonsynTtaGta26250.9615381094-1096
ORF1ab/nsp297L97VL277VnonsynTtAGtT2610.03846151094-1096
ORF1ab/nsp297L97FL277FnonsynttAttT25180.721094-1096
ORF1ab/nsp297L97FL277FnonsynttAttC2570.281094-1096
ORF1ab/nsp297L97IL277InonsynTtaAta20170.851094-1096
ORF1ab/nsp297L97IL277InonsynTtAAtT2030.151094-1096
ORF1ab/nsp297L97XL277XnonsyntTatAa1290.751094-1096
ORF1ab/nsp297L97XL277XnonsyntTatGa1230.251094-1096
ORF1ab/nsp297L97del1L277del1delttAtt-1090.91094-1096
ORF1ab/nsp297L97del1L277del1delTta-ta1010.11094-1096
ORF1ab/nsp297L97YL277YnonsyntTAtAT630.51094-1096
ORF1ab/nsp297L97YL277YnonsyntTAtAC630.51094-1096
ORF1ab/nsp297L97RL277RnonsynTTaCGa520.41094-1096
ORF1ab/nsp297L97RL277RnonsynTTaAGa510.21094-1096
ORF1ab/nsp297L97RL277RnonsynTTACGG510.21094-1096
ORF1ab/nsp297L97RL277RnonsynTTACGC510.21094-1096
ORF1ab/nsp297L97QL277QnonsynTTaCAa4411094-1096
ORF1ab/nsp297L97KL277KnonsynTTaAAa3311094-1096
ORF1ab/nsp297L97NL277NnonsynTTAAAT3311094-1096
ORF1ab/nsp297L97AL277AnonsynTTaGCa210.51094-1096
ORF1ab/nsp297L97AL277AnonsynTTAGCC210.51094-1096
ORF1ab/nsp297L97PL277PnonsynTTaCCa210.51094-1096
ORF1ab/nsp297L97CL277CnonsyntTAtGT210.51094-1096
ORF1ab/nsp297L97PL277PnonsynTTACCG210.51094-1096
ORF1ab/nsp297L97CL277CnonsyntTAtGC210.51094-1096
ORF1ab/nsp297L97ML277MnonsynTtAAtG1111094-1096

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp297L97LTtaCta390546All0.000075
ORF1ab/nsp297L97LttAttG153546All0.000029
ORF1ab/nsp297L97LTtACtT1546All0
ORF1ab/nsp297L97LTtACtC1546All0
ORF1ab/nsp297L97LTtACtG1546All0
ORF1ab/nsp297L97LTtaCta70104AY.40.000109
ORF1ab/nsp297L97LttAttG34104AY.40.000053
ORF1ab/nsp297L97StTatCa8788All0.000017
ORF1ab/nsp297L97STTAAGT188All0
ORF1ab/nsp297L97delTTA---8585All0.000016
ORF1ab/nsp297L97LTtaCta5264B.1.1.70.000047
ORF1ab/nsp297L97LttAttG1264B.1.1.70.000011
ORF1ab/nsp297L97LTtaCta4141B.1.1.2011
ORF1ab/nsp297L97StTatCa3939B.1.1770.000514
ORF1ab/nsp297L97LttAttG2637B.10.000238
ORF1ab/nsp297L97LTtaCta1137B.10.000101
ORF1ab/nsp297L97LttAttG3232B.1.2451
ORF1ab/nsp297L97LTtaCta2829B.1.617.20.000105
ORF1ab/nsp297L97LttAttG129B.1.617.20.000004
ORF1ab/nsp297L97VTtaGta2526All0.000005
ORF1ab/nsp297L97VTtAGtT126All0
ORF1ab/nsp297L97FttAttT1825All0.000003
ORF1ab/nsp297L97FttAttC725All0.000001
ORF1ab/nsp297L97LTtaCta2525AY.230.001744
ORF1ab/nsp297L97LTtaCta2122AY.250.000126
ORF1ab/nsp297L97LttAttG122AY.250.000006
ORF1ab/nsp297L97LTtaCta2121B.1.1770.000277
ORF1ab/nsp297L97ITtaAta1720All0.000003
ORF1ab/nsp297L97ITtAAtT320All0.000001
ORF1ab/nsp297L97delTTA---2020B.1.1.70.000018
ORF1ab/nsp297L97LTtaCta1919AY.1080.020948
ORF1ab/nsp297L97LttAttG1717B.1.5650.013776
ORF1ab/nsp297L97XtTatAa912All0.000002
ORF1ab/nsp297L97XtTatGa312All0.000001
ORF1ab/nsp297L97LTtaCta1212AY.30.000119
ORF1ab/nsp297L97LTtaCta712AY.430.000031
ORF1ab/nsp297L97LttAttG512AY.430.000022
ORF1ab/nsp297L97StTatCa1212B.1.1.70.000011
ORF1ab/nsp297L97del1ttAtt-910All0.000002
ORF1ab/nsp297L97del1Tta-ta110All0
ORF1ab/nsp297L97VTtaGta1010B.1.5950.00261
ORF1ab/nsp297L97LTtaCta88AY.470.000249
ORF1ab/nsp297L97LTtaCta57B.1.10.000091
ORF1ab/nsp297L97LttAttG27B.1.10.000036
ORF1ab/nsp297L97LTtaCta67B.1.20.000053
ORF1ab/nsp297L97LttAttG17B.1.20.000009
ORF1ab/nsp297L97delTTA---77B.1.617.20.000026
ORF1ab/nsp297L97ITtaAta360.166667
ORF1ab/nsp297L97ITtAAtT360.166667
ORF1ab/nsp297L97YtTAtAC36All0.000001
ORF1ab/nsp297L97YtTAtAT36All0.000001
ORF1ab/nsp297L97LTtaCta66B.1.1.5190.000238
ORF1ab/nsp297L97RTTaCGa25All0
ORF1ab/nsp297L97RTTaAGa15All0
ORF1ab/nsp297L97RTTACGC15All0
ORF1ab/nsp297L97RTTACGG15All0
ORF1ab/nsp297L97delTTA---55AY.250.00003
ORF1ab/nsp297L97FttAttT55AY.40.000008
ORF1ab/nsp297L97delTTA---55AY.40.000008
ORF1ab/nsp297L97LTtaCta35AY.440.000018
ORF1ab/nsp297L97LttAttG25AY.440.000012
ORF1ab/nsp297L97LTtaCta55AY.980.000395
ORF1ab/nsp297L97delTTA---55B.1.1.330.002104
ORF1ab/nsp297L97FttAttT440.222222
ORF1ab/nsp297L97XtTatAa340.166667
ORF1ab/nsp297L97XtTatGa140.055556
ORF1ab/nsp297L97QTTaCAa44All0.000001
ORF1ab/nsp297L97delTTA---44AY.430.000018
ORF1ab/nsp297L97ITtaAta44AY.440.000024
ORF1ab/nsp297L97LTtaCta44AY.60.000165
ORF1ab/nsp297L97delTTA---44B.1.1.3480.003185
ORF1ab/nsp297L97LTtaCta44P.10.000063
ORF1ab/nsp297L97KTTaAAa330.166667
ORF1ab/nsp297L97YtTAtAT330.166667
ORF1ab/nsp297L97NTTAAAT330.166667
ORF1ab/nsp297L97KTTaAAa33All0.000001
ORF1ab/nsp297L97NTTAAAT33All0.000001
ORF1ab/nsp297L97LttAttG33AY.350.000699
ORF1ab/nsp297L97LttAttG33AY.420.000121
ORF1ab/nsp297L97QTTaCAa33B.10.000027
ORF1ab/nsp297L97LTtaCta23B.1.1.1370.025
ORF1ab/nsp297L97LTtACtG13B.1.1.1370.0125
ORF1ab/nsp297L97FttAttT23B.1.1.5190.000079
ORF1ab/nsp297L97FttAttC13B.1.1.5190.00004
ORF1ab/nsp297L97VTtaGta33B.1.1.70.000003
ORF1ab/nsp297L97FttAttC23B.1.1.70.000002
ORF1ab/nsp297L97FttAttT13B.1.1.70.000001
ORF1ab/nsp297L97VTtaGta33B.1.177.600.000655
ORF1ab/nsp297L97ITtaAta33B.1.258.170.000312
ORF1ab/nsp297L97StTatCa33B.1.4990.003151
ORF1ab/nsp297L97LttAttG23B.1.6370.000146
ORF1ab/nsp297L97LTtaCta13B.1.6370.000073
ORF1ab/nsp297L97LTtaCta33B.4.80.214286
ORF1ab/nsp297L97delTTA---220.111111
ORF1ab/nsp297L97VTtaGta120.055556
ORF1ab/nsp297L97LTtACtT120.055556
ORF1ab/nsp297L97VTtAGtT120.055556
ORF1ab/nsp297L97LTtaCta120.055556
ORF1ab/nsp297L97RTTaCGa12A.60.005128
ORF1ab/nsp297L97RTTACGC12A.60.005128
ORF1ab/nsp297L97LTtACtC12A.60.005128
ORF1ab/nsp297L97LTtaCta12A.60.005128
ORF1ab/nsp297L97ATTaGCa12All0
ORF1ab/nsp297L97ATTAGCC12All0
ORF1ab/nsp297L97PTTaCCa12All0
ORF1ab/nsp297L97PTTACCG12All0
ORF1ab/nsp297L97CtTAtGC12All0
ORF1ab/nsp297L97CtTAtGT12All0
ORF1ab/nsp297L97LTtaCta12AY.1030.000006
ORF1ab/nsp297L97LttAttG12AY.1030.000006
ORF1ab/nsp297L97StTatCa22AY.140.000176
ORF1ab/nsp297L97FttAttT22AY.20.000712
ORF1ab/nsp297L97StTatCa22AY.250.000012
ORF1ab/nsp297L97LTtaCta22AY.260.000057
ORF1ab/nsp297L97delTTA---22AY.4.50.000215
ORF1ab/nsp297L97StTatCa22AY.430.000009
ORF1ab/nsp297L97ATTaGCa12AY.430.000004
ORF1ab/nsp297L97ATTAGCC12AY.430.000004
ORF1ab/nsp297L97StTatCa22AY.9.20.000073
ORF1ab/nsp297L97VTtaGta22B.10.000018
ORF1ab/nsp297L97StTatCa22B.1.10.000036
ORF1ab/nsp297L97XtTatAa12B.1.10.000018
ORF1ab/nsp297L97XtTatGa12B.1.10.000018
ORF1ab/nsp297L97LTtaCta22B.1.1.1920.004619
ORF1ab/nsp297L97LTtaCta22B.1.1.2140.000111
ORF1ab/nsp297L97LTtaCta22B.1.160.270.030303
ORF1ab/nsp297L97StTatCa22B.1.177.810.000379
ORF1ab/nsp297L97FttAttC12B.1.20.000009
ORF1ab/nsp297L97FttAttT12B.1.20.000009
ORF1ab/nsp297L97LTtaCta22B.1.36.180.00084
ORF1ab/nsp297L97LTtaCta22B.1.3670.001585
ORF1ab/nsp297L97ITtaAta22B.1.3980.005952
ORF1ab/nsp297L97delTTA---22B.1.4290.000047
ORF1ab/nsp297L97LTtaCta22B.1.4290.000047
ORF1ab/nsp297L97VTtaGta22B.1.4290.000047
ORF1ab/nsp297L97LTtaCta22B.1.6090.000959
ORF1ab/nsp297L97StTatCa22B.1.617.20.000008
ORF1ab/nsp297L97PTTaCCa12B.1.617.20.000004
ORF1ab/nsp297L97RTTACGG12B.1.617.20.000004
ORF1ab/nsp297L97RTTaCGa12B.1.617.20.000004
ORF1ab/nsp297L97PTTACCG12B.1.617.20.000004
ORF1ab/nsp297L97StTatCa22B.1.6280.000705
ORF1ab/nsp297L97delTTA---22N.60.014184
ORF1ab/nsp297L97delTTA---22P.20.000373
ORF1ab/nsp297L97RTTaAGa110.055556
ORF1ab/nsp297L97STTAAGT110.055556
ORF1ab/nsp297L97CtTAtGT110.055556
ORF1ab/nsp297L97LTtaCta11A.2.20.001689
ORF1ab/nsp297L97CtTAtGC11A.60.005128
ORF1ab/nsp297L97FttAttC11A.60.005128
ORF1ab/nsp297L97XtTatGa11A.60.005128
ORF1ab/nsp297L97LTtaCta11AE.80.000489
ORF1ab/nsp297L97MTtAAtG11All0
ORF1ab/nsp297L97LTtaCta11AY.1020.000027
ORF1ab/nsp297L97delTTA---11AY.1030.000006
ORF1ab/nsp297L97VTtaGta11AY.1030.000006
ORF1ab/nsp297L97LTtaCta11AY.1140.000231
ORF1ab/nsp297L97LttAttG11AY.160.00038
ORF1ab/nsp297L97LTtaCta11AY.200.000039
ORF1ab/nsp297L97StTatCa11AY.23.10.000417
ORF1ab/nsp297L97LTtaCta11AY.240.000431
ORF1ab/nsp297L97ITtaAta11AY.250.000006
ORF1ab/nsp297L97delTTA---11AY.260.000028
ORF1ab/nsp297L97LttAttG11AY.290.000016
ORF1ab/nsp297L97StTatCa11AY.30.00001
ORF1ab/nsp297L97LTtaCta11AY.3.10.000085
ORF1ab/nsp297L97del1ttAtt-11AY.330.000067
ORF1ab/nsp297L97StTatCa11AY.390.000025
ORF1ab/nsp297L97LTtaCta11AY.390.000025
ORF1ab/nsp297L97FttAttT11AY.4.20.000022
ORF1ab/nsp297L97StTatCa11AY.420.00004
ORF1ab/nsp297L97XtTatAa11AY.440.000006
ORF1ab/nsp297L97del1ttAtt-11AY.440.000006
ORF1ab/nsp297L97FttAttT11AY.440.000006
ORF1ab/nsp297L97StTatCa11AY.440.000006
ORF1ab/nsp297L97VTtaGta11AY.440.000006
ORF1ab/nsp297L97LTtaCta11AY.46.20.000635
ORF1ab/nsp297L97del1ttAtt-11AY.46.60.000072
ORF1ab/nsp297L97ITtaAta11AY.470.000031
ORF1ab/nsp297L97LTtaCta11AY.50.000021
ORF1ab/nsp297L97StTatCa11AY.50.000021
ORF1ab/nsp297L97delTTA---11AY.5.30.000337
ORF1ab/nsp297L97LTtaCta11AY.560.001605
ORF1ab/nsp297L97XtTatAa11AY.570.000656
ORF1ab/nsp297L97StTatCa11AY.610.000105
ORF1ab/nsp297L97delTTA---11AY.620.000436
ORF1ab/nsp297L97LttAttG11AY.640.000595
ORF1ab/nsp297L97StTatCa11AY.70.000196
ORF1ab/nsp297L97LTtaCta11AY.7.10.000113
ORF1ab/nsp297L97LTtaCta11AY.740.000116
ORF1ab/nsp297L97StTatCa11AY.750.000056
ORF1ab/nsp297L97LTtaCta11AY.750.000056
ORF1ab/nsp297L97LTtaCta11AY.790.001211
ORF1ab/nsp297L97delTTA---11AY.840.000437
ORF1ab/nsp297L97StTatCa11AY.98.10.000048
ORF1ab/nsp297L97MTtAAtG11AY.990.001049
ORF1ab/nsp297L97StTatCa11AZ.30.00152
ORF1ab/nsp297L97YtTAtAC11B.10.000009
ORF1ab/nsp297L97delTTA---11B.10.000009
ORF1ab/nsp297L97delTTA---11B.1.10.000018
ORF1ab/nsp297L97YtTAtAC11B.1.10.000018
ORF1ab/nsp297L97del1ttAtt-11B.1.10.000018
ORF1ab/nsp297L97LTtaCta11B.1.1.2220.000204
ORF1ab/nsp297L97YtTAtAC11B.1.1.280.000311
ORF1ab/nsp297L97StTatCa11B.1.1.390.00051
ORF1ab/nsp297L97del1Tta-ta11B.1.1.70.000001
ORF1ab/nsp297L97XtTatAa11B.1.1.70.000001
ORF1ab/nsp297L97VTtaGta11B.1.1.700.000341
ORF1ab/nsp297L97delTTA---11B.1.1.700.000341
ORF1ab/nsp297L97QTTaCAa11B.1.1670.007812
ORF1ab/nsp297L97delTTA---11B.1.1770.000013
ORF1ab/nsp297L97delTTA---11B.1.177.40.000211
ORF1ab/nsp297L97StTatCa11B.1.177.440.000519
ORF1ab/nsp297L97delTTA---11B.1.177.510.004566
ORF1ab/nsp297L97delTTA---11B.1.177.540.000606
ORF1ab/nsp297L97delTTA---11B.1.177.70.000165
ORF1ab/nsp297L97delTTA---11B.1.177.870.000728
ORF1ab/nsp297L97delTTA---11B.1.177.90.001332
ORF1ab/nsp297L97del1ttAtt-11B.1.20.000009
ORF1ab/nsp297L97ITtaAta11B.1.20.000009
ORF1ab/nsp297L97XtTatAa11B.1.20.000009
ORF1ab/nsp297L97ITtaAta11B.1.2220.001692
ORF1ab/nsp297L97delTTA---11B.1.230.006061
ORF1ab/nsp297L97VTtaGta11B.1.2350.002519
ORF1ab/nsp297L97StTatCa11B.1.2430.00007
ORF1ab/nsp297L97del1ttAtt-11B.1.2430.00007
ORF1ab/nsp297L97delTTA---11B.1.258.100.011364
ORF1ab/nsp297L97LttAttG11B.1.3330.010526
ORF1ab/nsp297L97FttAttC11B.1.466.20.000391
ORF1ab/nsp297L97StTatCa11B.1.5260.000024
ORF1ab/nsp297L97LttAttG11B.1.5260.000024
ORF1ab/nsp297L97del1ttAtt-11B.1.5800.004065
ORF1ab/nsp297L97LttAttG11B.1.5820.000491
ORF1ab/nsp297L97LttAttG11B.1.5960.000087
ORF1ab/nsp297L97del1ttAtt-11B.1.5960.000087
ORF1ab/nsp297L97del1ttAtt-11B.1.617.20.000004
ORF1ab/nsp297L97FttAttC11B.1.617.20.000004
ORF1ab/nsp297L97delTTA---11B.1.617.30.002985
ORF1ab/nsp297L97ITtaAta11B.1.6200.000946
ORF1ab/nsp297L97StTatCa11B.1.6210.000089
ORF1ab/nsp297L97delTTA---11B.1.6210.000089
ORF1ab/nsp297L97LttAttG11B.1.621.10.000506
ORF1ab/nsp297L97delTTA---11B.340.013699
ORF1ab/nsp297L97FttAttT11C.230.005814
ORF1ab/nsp297L97StTatCa11D.20.000075
ORF1ab/nsp297L97XtTatAa11D.20.000075
ORF1ab/nsp297L97delTTA---11N.40.004255
ORF1ab/nsp297L97delTTA---11P.1.10.000318
ORF1ab/nsp297L97LttAttG11P.1.140.000048
ORF1ab/nsp297L97LttAttG11P.1.60.001946
ORF1ab/nsp297L97delTTA---11Q.10.000126
ORF1ab/nsp297L97LTtaCta11Q.10.000126
ORF1ab/nsp297L97delTTA---11Q.20.000613
ORF1ab/nsp297L97LttAttG11R.10.00009
ORF1ab/nsp297L97delTTA---11U.30.003861